diff --git a/example_files/example.annotation b/example_files/example.annotation
new file mode 100644
index 0000000..47fc40e
--- /dev/null
+++ b/example_files/example.annotation
@@ -0,0 +1,123 @@
+## ENSEMBL VARIANT EFFECT PREDICTOR v108.1
+## Output produced at 2022-11-13 22:57:45
+## Using cache in ./homo_sapiens/105_GRCh37
+## Using API version 108, DB version ?
+## ensembl-variation version 108.a885ada
+## ensembl version 108.d8a9c80
+## ensembl-io version 108.58d13c1
+## ensembl-funcgen version 108.56bb136
+## gnomAD version r2.1
+## dbSNP version 154
+## COSMIC version 92
+## ClinVar version 202012
+## polyphen version 2.2.2
+## sift version sift5.2.2
+## genebuild version 2011-04
+## HGMD-PUBLIC version 20204
+## 1000genomes version phase3
+## assembly version GRCh37.p13
+## regbuild version 1.0
+## gencode version GENCODE 19
+## Column descriptions:
+## Uploaded_variation : Identifier of uploaded variant
+## Location : Location of variant in standard coordinate format (chr:start or chr:start-end)
+## Allele : The variant allele used to calculate the consequence
+## Gene : Stable ID of affected gene
+## Feature : Stable ID of feature
+## Feature_type : Type of feature - Transcript, RegulatoryFeature or MotifFeature
+## Consequence : Consequence type
+## cDNA_position : Relative position of base pair in cDNA sequence
+## CDS_position : Relative position of base pair in coding sequence
+## Protein_position : Relative position of amino acid in protein
+## Amino_acids : Reference and variant amino acids
+## Codons : Reference and variant codon sequence
+## Existing_variation : Identifier(s) of co-located known variants
+## Extra column keys:
+## IMPACT : Subjective impact classification of consequence type
+## DISTANCE : Shortest distance from variant to transcript
+## STRAND : Strand of the feature (1/-1)
+## FLAGS : Transcript quality flags
+## BIOTYPE : Biotype of transcript or regulatory feature
+## NEAREST : Identifier(s) of nearest transcription start site
+## VEP command-line: vep --offline --cache --dir_cache . -i HARE_results/example.snps -o HARE_results/example.annotation --nearest gene --cache_version 105 --distance 5000 --biotype --force_overwrite
+#Uploaded_variation	Location	Allele	Gene	Feature	Feature_type	Consequence	cDNA_position	CDS_position	Protein_position	Amino_acids	Codons	Existing_variation	Extra
+rs4908936	1:5963669	C	ENSG00000131697	ENST00000378156	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=protein_coding;NEAREST=ENSG00000069424
+rs4908936	1:5963669	C	ENSG00000131697	ENST00000378169	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000069424
+rs4908936	1:5963669	C	ENSG00000131697	ENST00000466897	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;FLAGS=cds_start_NF;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000069424
+rs4908936	1:5963669	C	ENSG00000131697	ENST00000478423	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=processed_transcript;NEAREST=ENSG00000069424
+rs4908936	1:5963669	C	ENSG00000131697	ENST00000489180	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000069424
+rs4411131	1:116164626	C	ENSG00000207502	ENST00000384771	Transcript	non_coding_transcript_exon_variant	1	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=snoRNA;NEAREST=ENSG00000173218
+rs10800714	1:200562117	A	ENSG00000118193	ENST00000367350	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=protein_coding;NEAREST=ENSG00000118193
+rs189606623	3:46432609	C	ENSG00000223552	ENST00000451485	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=antisense;NEAREST=ENSG00000121797
+rs6548981	3:68148825	T	ENSG00000183662	ENST00000478136	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000183662
+rs6548981	3:68148825	T	ENSG00000183662	ENST00000496687	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000183662
+rs4600819	3:163285923	A	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000090402
+rs74505207	4:759883	A	ENSG00000185619	ENST00000362003	Transcript	3_prime_UTR_variant	1140	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000185619	ENST00000430644	Transcript	3_prime_UTR_variant,NMD_transcript_variant	2117	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000185619	ENST00000440452	Transcript	3_prime_UTR_variant,NMD_transcript_variant	2108	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000233799	ENST00000454037	Transcript	upstream_gene_variant	-	-	-	-	-	-	IMPACT=MODIFIER;DISTANCE=1021;STRAND=-1;BIOTYPE=antisense;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000185619	ENST00000470161	Transcript	3_prime_UTR_variant	1139	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000185619	ENST00000488032	Transcript	downstream_gene_variant	-	-	-	-	-	-	IMPACT=MODIFIER;DISTANCE=4731;STRAND=1;BIOTYPE=processed_transcript;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000249592	ENST00000503571	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=antisense;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000185619	ENST00000505655	Transcript	3_prime_UTR_variant	789	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000249592	ENST00000507446	Transcript	downstream_gene_variant	-	-	-	-	-	-	IMPACT=MODIFIER;DISTANCE=1046;STRAND=-1;BIOTYPE=antisense;NEAREST=ENSG00000185619
+rs74505207	4:759883	A	ENSG00000185619	ENST00000521023	Transcript	3_prime_UTR_variant	2108	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000185619
+rs374109	5:10012518	G	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000150756
+rs6892991	5:25609505	G	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000040731
+rs356561	5:63328721	C	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000178394
+rs10037878	5:100529927	A	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000113532
+rs35765330	5:128579817	C	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000066583
+rs114006078	6:31211473	A	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000204525
+rs2931085	6:120662994	C	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000111885
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000222511	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000257659	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000380058	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000417207	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;FLAGS=cds_end_NF;BIOTYPE=protein_coding;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000421719	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000426366	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;FLAGS=cds_end_NF;BIOTYPE=protein_coding;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000439832	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000450619	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;FLAGS=cds_end_NF;BIOTYPE=protein_coding;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000453512	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000474503	Transcript	upstream_gene_variant	-	-	-	-	-	-	IMPACT=MODIFIER;DISTANCE=4567;STRAND=1;BIOTYPE=processed_transcript;NEAREST=ENSG00000105793
+rs17867623	7:89979275	A	ENSG00000105793	ENST00000477972	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=retained_intron;NEAREST=ENSG00000105793
+rs10827956	10:20365362	T	ENSG00000120594	ENST00000377238	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=processed_transcript;NEAREST=ENSG00000120594
+rs10827956	10:20365362	T	ENSG00000120594	ENST00000377242	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000120594
+rs10827956	10:20365362	T	ENSG00000120594	ENST00000377252	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000120594
+rs10827956	10:20365362	T	ENSG00000238246	ENST00000451584	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=antisense;NEAREST=ENSG00000120594
+rs7932988	11:10094476	C	ENSG00000133812	ENST00000256190	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=protein_coding;NEAREST=ENSG00000133812
+rs7932988	11:10094476	C	ENSG00000133812	ENST00000533770	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=retained_intron;NEAREST=ENSG00000133812
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000256678	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000317560	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000337898	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000358314	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000395568	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000395580	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000432191	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000449194	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000549190	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs118067598	12:42810387	T	ENSG00000134283	ENST00000552761	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000139174
+rs34193955	13:94042801	A	ENSG00000183098	ENST00000377047	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000183098
+rs34193955	13:94042801	A	ENSG00000235784	ENST00000426409	Transcript	downstream_gene_variant	-	-	-	-	-	-	IMPACT=MODIFIER;DISTANCE=4429;STRAND=-1;BIOTYPE=processed_pseudogene;NEAREST=ENSG00000183098
+rs2543388	14:76629268	G	ENSG00000089916	ENST00000261530	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000089916
+rs2543388	14:76629268	G	ENSG00000089916	ENST00000312858	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000089916
+rs2543388	14:76629268	G	ENSG00000089916	ENST00000554125	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=retained_intron;NEAREST=ENSG00000089916
+rs2543388	14:76629268	G	ENSG00000089916	ENST00000554375	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000089916
+rs2543388	14:76629268	G	ENSG00000089916	ENST00000556663	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000089916
+rs2543388	14:76629268	G	ENSG00000089916	ENST00000557263	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000089916
+rs117034934	15:96760479	G	ENSG00000247809	ENST00000559505	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=antisense;NEAREST=ENSG00000205148
+rs117034934	15:96760479	G	ENSG00000247809	ENST00000560800	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=antisense;NEAREST=ENSG00000205148
+rs77508211	16:54447249	A	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000177508
+rs9906524	17:4111727	A	ENSG00000185722	ENST00000341657	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=protein_coding;NEAREST=ENSG00000185722
+rs9906524	17:4111727	A	ENSG00000185722	ENST00000433651	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=protein_coding;NEAREST=ENSG00000185722
+rs9906524	17:4111727	A	ENSG00000185722	ENST00000570535	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=protein_coding;NEAREST=ENSG00000185722
+rs9906524	17:4111727	A	ENSG00000185722	ENST00000570934	Transcript	intron_variant,non_coding_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=retained_intron;NEAREST=ENSG00000185722
+rs9906524	17:4111727	A	ENSG00000185722	ENST00000572412	Transcript	intron_variant,NMD_transcript_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=nonsense_mediated_decay;NEAREST=ENSG00000185722
+rs9906524	17:4111727	A	ENSG00000185722	ENST00000573250	Transcript	upstream_gene_variant	-	-	-	-	-	-	IMPACT=MODIFIER;DISTANCE=300;STRAND=-1;BIOTYPE=retained_intron;NEAREST=ENSG00000185722
+rs9906524	17:4111727	A	ENSG00000185722	ENST00000574367	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=-1;BIOTYPE=protein_coding;NEAREST=ENSG00000185722
+rs78148126	18:63872801	G	-	-	-	intergenic_variant	-	-	-	-	-	-	IMPACT=MODIFIER;NEAREST=ENSG00000071991
+rs722568	20:11285245	T	ENSG00000230990	ENST00000444792	Transcript	upstream_gene_variant	-	-	-	-	-	-	IMPACT=MODIFIER;DISTANCE=3072;STRAND=-1;BIOTYPE=lincRNA;NEAREST=ENSG00000125899
+rs11089810	22:37323638	T	ENSG00000100368	ENST00000262825	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000100368
+rs11089810	22:37323638	T	ENSG00000100368	ENST00000403662	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000100368
+rs11089810	22:37323638	T	ENSG00000100368	ENST00000406230	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000100368
+rs11089810	22:37323638	T	ENSG00000100368	ENST00000421539	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;FLAGS=cds_end_NF;BIOTYPE=protein_coding;NEAREST=ENSG00000100368
+rs11089810	22:37323638	T	ENSG00000100368	ENST00000536485	Transcript	intron_variant	-	-	-	-	-	-	IMPACT=MODIFIER;STRAND=1;BIOTYPE=protein_coding;NEAREST=ENSG00000100368
diff --git a/example_files/example.biomart b/example_files/example.biomart
new file mode 100644
index 0000000..0b2c0b1
--- /dev/null
+++ b/example_files/example.biomart
@@ -0,0 +1,13 @@
+ENSEMBL_ID	START	END	CHR	GENE_NAME	STRAND
+ENSG00000069424	6051526	6161253	1	KCNAB2	1
+ENSG00000089916	76618259	76720685	14	GPATCH2L	1
+ENSG00000100368	37309670	37336491	22	CSF2RB	1
+ENSG00000105793	89964537	90020769	7	GTPBP10	1
+ENSG00000118193	200520628	200589862	1	KIF14	-1
+ENSG00000120594	20105168	20578785	10	PLXDC2	1
+ENSG00000133812	9800214	10315754	11	SBF2	-1
+ENSG00000139174	42852140	42984157	12	PRICKLE1	-1
+ENSG00000183098	93879095	95059655	13	GPC6	1
+ENSG00000183662	68053359	68594776	3	FAM19A1	1
+ENSG00000185619	699537	764428	4	PCGF3	1
+ENSG00000185722	4067201	4167274	17	ANKFY1	-1
diff --git a/example_files/example.intersections b/example_files/example.intersections
new file mode 100644
index 0000000..ec22669
--- /dev/null
+++ b/example_files/example.intersections
@@ -0,0 +1,1002 @@
+category	int_per_bp	set_size
+simulation	1.186044408467764e-06	12
+simulation	5.93022204233882e-07	12
+simulation	2.96511102116941e-07	12
+simulation	1.4825555105847051e-06	12
+simulation	8.895333063508231e-07	12
+simulation	2.96511102116941e-07	12
+simulation	8.895333063508231e-07	12
+simulation	2.96511102116941e-07	12
+simulation	5.93022204233882e-07	12
+simulation	5.93022204233882e-07	12
+simulation	1.4825555105847051e-06	12
+simulation	5.93022204233882e-07	12
+simulation	5.93022204233882e-07	12
+simulation	2.075577714818587e-06	12
+simulation	2.075577714818587e-06	12
+simulation	2.668599919052469e-06	12
+simulation	5.93022204233882e-07	12
+simulation	1.4825555105847051e-06	12
+simulation	2.372088816935528e-06	12
+simulation	8.895333063508231e-07	12
+simulation	2.96511102116941e-07	12
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diff --git a/example_files/example.locations.bed b/example_files/example.locations.bed
new file mode 100644
index 0000000..f82f371
--- /dev/null
+++ b/example_files/example.locations.bed
@@ -0,0 +1,12 @@
+1	6051526	6161253
+14	76618259	76720685
+22	37309670	37336491
+7	89964537	90020769
+1	200520628	200589862
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diff --git a/example_files/example.snps b/example_files/example.snps
new file mode 100644
index 0000000..e38f42a
--- /dev/null
+++ b/example_files/example.snps
@@ -0,0 +1,26 @@
+1	5963669	rs4908936	A	C	.	.	.
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diff --git a/example_files/exampleGWAS.tsv b/example_files/exampleGWAS.tsv
new file mode 100644
index 0000000..86662db
--- /dev/null
+++ b/example_files/exampleGWAS.tsv
@@ -0,0 +1,2464 @@
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diff --git a/example_files/exampleResults.tsv b/example_files/exampleResults.tsv
new file mode 100644
index 0000000..c6d0d17
--- /dev/null
+++ b/example_files/exampleResults.tsv
@@ -0,0 +1,2 @@
+file	set_size	n_simulations	distribution	KS_stat	mean_int_per_bp	set_int_per_bp	pvalue	frac_less	frac_more
+example_files/example.intersections	12	1000	weibull	0.551494769098821	1.03393421308177e-06	2.07557771481859e-06	0.315534798139974	0.872	0.071