From 4e570d20d5c7c0bb635374fdb169e606f528861f Mon Sep 17 00:00:00 2001 From: Google Code Exporter Date: Wed, 25 Mar 2015 12:53:45 -0400 Subject: [PATCH 1/2] Migrating wiki contents from Google Code --- ProjectHome.md | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 ProjectHome.md diff --git a/ProjectHome.md b/ProjectHome.md new file mode 100644 index 0000000..536c753 --- /dev/null +++ b/ProjectHome.md @@ -0,0 +1,34 @@ +This projects provides a visualization for ontologies in the style of OBO-Edit. +It's a standalone library and provides a Protégé plugin + +# OBO Graph View # + +This ontology visualization is based on the OBO-Edit code. It was extracted and modified to use the OWL-API. +Furthermore, it can be used in any Java Swing application. + +# Protégé PlugIn # + +The plugin is tested and developed with Protégé Version 4.1 and 4.2 (beta). +For more help on Protégé see [Protégé Documentation](http://protegewiki.stanford.edu/wiki/Protege4UserDocs) + +## Installation as Protégé PlugIn ## +Download the latest version from the [Downloads](http://code.google.com/p/obographview/downloads/list) tab. + +Unzip the archive file. There should be one file: **org.geneontology.view.protege.jar** + +Copy this jar file in the plugins folder of your Protégé installation. + +The Plugin is a View Component, it can be a component of any tab in Protégé. To include it in a tab navigate to: + +Window -> Views -> Ontology Views -> OBO Graph View Component + +This will create a new component, which can be dropped in an appropriate position in the Protégé tab. +The recommended tab is the 'Classes' tab. + +## Usage ## + +To start the rendering, click on the **Synchronize View** button. + +The plugin requires a reasoner and will warn you, if there is no up-to-date reasoner instance available. + +Selections in the Class hierarchy are reflected in the visualization. A selection will update the rendered nodes. \ No newline at end of file From 8c206c6d4400dd17774d15032f9687e956ca4882 Mon Sep 17 00:00:00 2001 From: hdietze Date: Wed, 25 Mar 2015 10:13:41 -0700 Subject: [PATCH 2/2] Rename ProjectHome.md to README.md --- ProjectHome.md => README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename ProjectHome.md => README.md (96%) diff --git a/ProjectHome.md b/README.md similarity index 96% rename from ProjectHome.md rename to README.md index 536c753..282048a 100644 --- a/ProjectHome.md +++ b/README.md @@ -31,4 +31,4 @@ To start the rendering, click on the **Synchronize View** button. The plugin requires a reasoner and will warn you, if there is no up-to-date reasoner instance available. -Selections in the Class hierarchy are reflected in the visualization. A selection will update the rendered nodes. \ No newline at end of file +Selections in the Class hierarchy are reflected in the visualization. A selection will update the rendered nodes.