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references.bib
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@article{VanDerMaaten2014,
title = {Accelerating T-{{SNE}} Using Tree-Based Algorithms},
volume = {15},
number = {Oct},
journal = {Journal of Machine Learning Research},
author = {{van der Maaten}, Laurens},
year = {2014},
pages = {3221-3245}
}
@article{Linderman2019,
title = {Fast Interpolation-Based t-{{SNE}} for Improved Visualization of Single-Cell {{RNA}}-Seq Data},
volume = {16},
number = {3},
journal = {Nature Methods},
doi = {10.1038/s41592-018-0308-4},
author = {Linderman, George C. and Rachh, Manas and Hoskins, Jeremy G. and Steinerberger, Stefan and Kluger, Yuval},
year = {2019},
pages = {243-245}
}
@article{Blumofe1996,
title = {Cilk: An Efficient Multithreaded Runtime System},
volume = {37},
number = {1},
journal = {Journal of Parallel and Distributed Computing},
doi = {10.1006/jpdc.1996.0107},
author = {Blumofe, Robert D. and Joerg, Christopher F. and Kuszmaul, Bradley C. and Leiserson, Charles E. and Randall, Keith H. and Zhou, Yuli},
year = {1996},
pages = {55-69},
publisher = {{Elsevier}}
}
@article{Maaten2008,
title = {Visualizing Data Using T-{{SNE}}},
volume = {9},
number = {Nov},
journal = {Journal of Machine Learning Research},
author = {{van der Maaten}, Laurens and Hinton, Geoffrey E.},
year = {2008},
pages = {2579-2605}
}
@inproceedings{Buluc2009,
title = {Parallel Sparse Matrix-Vector and Matrix-Transpose-Vector Multiplication Using Compressed Sparse Blocks},
booktitle = {Proceedings of the 21st {{Annual Symposium}} on {{Parallelism}} in {{Algorithms}} and {{Architectures}}},
doi = {10.1145/1583991.1584053},
author = {Bulu{\c c}, Aydin and Fineman, Jeremy T. and Frigo, Matteo and Gilbert, John R. and Leiserson, Charles E.},
year = {2009},
pages = {233-244}
}
@inproceedings{Pitsianis2019,
title = {Spaceland Embedding of Sparse Stochastic Graphs},
booktitle = {{{IEEE High Performance Extreme Computing Conference (To appear)}}},
author = {Pitsianis, Nikos and Iliopoulos, Alexandros-Stavros and Floros, Dimitris and Sun, Xiaobai},
year = {2019},
url = {https://arxiv.org/abs/1906.05582},
note = {(To appear)}
}
@article{Yang2015,
title = {Defining and Evaluating Network Communities Based on Ground-Truth},
volume = {42},
number = {1},
journal = {Knowledge and Information Systems},
doi = {10.1007/s10115-013-0693-z},
author = {Yang, Jaewon and Leskovec, Jure},
year = {2015},
pages = {181-213},
publisher = {{Springer}}
}
@article{Kovacs2019,
title = {Network-Based Prediction of Protein Interactions},
volume = {10},
issn = {2041-1723},
number = {1},
journal = {Nature Communications},
doi = {10.1038/s41467-019-09177-y},
author = {Kov{\'a}cs, Istv{\'a}n A. and Luck, Katja and Spirohn, Kerstin and Wang, Yang and Pollis, Carl and Schlabach, Sadie and Bian, Wenting and Kim, Dae-Kyum and Kishore, Nishka and Hao, Tong and Calderwood, Michael A. and Vidal, Marc and Barab{\'a}si, Albert-L{\'a}szl{\'o}},
year = {2019},
pages = {1240}
}
@inproceedings{Hinton2003,
title = {Stochastic Neighbor Embedding},
volume = {15},
booktitle = {Advances in {{Neural Information Processing Systems}}},
author = {Hinton, Geoffrey E. and Roweis, Sam T.},
year = {2003},
pages = {857-864}
}
@misc{Zenodo,
title = {sgtsnepi: Swift Neighbor Embedding of Sparse Stochastic Graphs},
author = {Pitsianis, Nikos and Floros, Dimitris and Iliopoulos, Alexandros-Stavros and Sun, Xiaobai},
year = 2019,
doi = {10.5281/zenodo.3334873}
}