Some questions about Figures 7B and 7C in the article

[BeyondMyPast228]

Hi, thank you for sharing the detailed code. I have some questions about reproducing Figures 7B (SnATAC correlated with tumor) and 7C from the article that I would like to ask you about.

One question is regarding the qbed format. How can I convert the fragments.tsv output from snATAC into qbed format? Could you provide some demo data example for qbed format in ATAC and WGS?

Another question is about the file cancer_snvdens___{tumor}___normdens.1000000binsize_10quantiles.qbed needed for calculating the correlation. What operations are performed to achieve the "10 quantiles"?

If possible, could you indicate which scripts are involved in generating Figure 7B?

Looking forward to your response.