From 00f040916e726b96a6773f1d02cfd6d38f25b849 Mon Sep 17 00:00:00 2001 From: Peter Kruczkiewicz Date: Fri, 7 Jul 2023 13:59:59 -0500 Subject: [PATCH] fix illumina.nf --- workflows/illumina.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/illumina.nf b/workflows/illumina.nf index 2ccc9e5..e821739 100644 --- a/workflows/illumina.nf +++ b/workflows/illumina.nf @@ -85,7 +85,7 @@ workflow ILLUMINA { ch_versions = ch_versions.mix(BLAST_BLASTN.out.versions) ch_blast = BLAST_BLASTN.out.txt.collect({ it[1] }) - SUBTYPING_REPORT(ZSTD_DECOMPRESS_CSV.out, ch_blast) + SUBTYPING_REPORT(ZSTD_DECOMPRESS_CSV.out.file, ch_blast) ch_versions = ch_versions.mix(SUBTYPING_REPORT.out.versions) SOFTWARE_VERSIONS(ch_versions.unique().collectFile(name: 'collated_versions.yml'))