From 02db6ba159654ea0b12cab70a13fb0f81b6dc3ac Mon Sep 17 00:00:00 2001
From: Peter Kruczkiewicz <peter.kruczkiewicz@gmail.com>
Date: Wed, 2 Aug 2023 16:09:27 -0500
Subject: [PATCH] Update usage.md and nextflow_schema.json removing
 enable_conda and use_mamba params

---
 docs/usage.md        | 14 --------------
 nextflow_schema.json | 14 --------------
 2 files changed, 28 deletions(-)

diff --git a/docs/usage.md b/docs/usage.md
index d59ce7f..21e3155 100644
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -311,20 +311,6 @@ Do not use coloured log outputs.
 
 Directory to keep pipeline Nextflow logs and reports.
 
-#### `--enable_conda`
-
-- Optional
-- Type: boolean
-
-Run this workflow with Conda. You can also use '-profile conda' instead of providing this parameter.
-
-#### `--use_mamba`
-
-- Optional
-- Type: boolean
-
-Use Mamba in place of Conda for faster Conda env creation.
-
 #### `--singularity_pull_docker_container`
 
 - Optional
diff --git a/nextflow_schema.json b/nextflow_schema.json
index 58b0e32..f73c94a 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -269,20 +269,6 @@
                     "fa_icon": "fas fa-cogs",
                     "hidden": true
                 },
-                "enable_conda": {
-                    "type": "boolean",
-                    "description": "Run this workflow with Conda. You can also use '-profile conda' instead of providing this parameter.",
-                    "default": false,
-                    "hidden": true,
-                    "fa_icon": "fas fa-bacon"
-                },
-                "use_mamba": {
-                    "type": "boolean",
-                    "description": "Use Mamba in place of Conda for faster Conda env creation.",
-                    "default": false,
-                    "hidden": true,
-                    "fa_icon": "fas fa-speedometer"
-                },
                 "singularity_pull_docker_container": {
                     "type": "boolean",
                     "description": "Instead of directly downloading Singularity images for use with Singularity, force the workflow to pull and convert Docker containers instead.",