diff --git a/assets/multiqc_config.yaml b/assets/multiqc_config.yaml index 955e952..aa104cc 100644 --- a/assets/multiqc_config.yaml +++ b/assets/multiqc_config.yaml @@ -4,9 +4,9 @@ report_comment: > analysis pipeline. For information about how to interpret these results, please see the documentation. report_section_order: - software_versions: + CFIA-NCFAD-nf-flu-summary-module: order: -1000 - CFIA-NCFAD-nf-flu-summary: + software_versions-module: order: -1001 read_count_multiplier: 1.0 @@ -14,6 +14,7 @@ read_count_prefix: '' read_count_desc: '' export_plots: true +disable_version_detection: true module_order: - samtools: @@ -48,32 +49,21 @@ mosdepth_config: - 30 - 10000 -run_modules: - - custom_content - - samtools - - mosdepth - - bcftools - -sp: - mosdepth/global_dist: - fn: '*.global.dist.txt' - table_columns_visible: - 'Samtools (Minimap2)': + 'Samtools (Minimap2): stats': flagstat_total: false mapped_passed: false error_rate: false 'non-primary_alignments': false - 'Bcftools Stats': + 'Bcftools Stats: Stats': number_of_MNPs: true - table_columns_placement: - 'Samtools (Minimap2)': + 'Samtools (Minimap2): stats': reads_mapped: 1010 raw_total_sequences: 1020 reads_mapped_percent: 1030 - 'Bcftools Stats': + 'Bcftools Stats: Stats': number_of_records: 1060 number_of_SNPs: 1070 number_of_MNPs: 1080