From 83a433fc8f9fe574ee125d4d4beeb4597eee3ddc Mon Sep 17 00:00:00 2001 From: Patrick Durand Date: Wed, 4 Oct 2023 08:30:38 +0200 Subject: [PATCH] pre-built image now available from Ifremer gitlab registry --- singularity/README.md | 16 ++++++++++++++-- 1 file changed, 14 insertions(+), 2 deletions(-) diff --git a/singularity/README.md b/singularity/README.md index 4959b7e..5e670b4 100644 --- a/singularity/README.md +++ b/singularity/README.md @@ -5,7 +5,19 @@ It is worth noting that this BeeDeeM image actually contains both BeeDeeM and [B Get a pre-built image --------------------- -Simply go to [https://data-dataref.ifremer.fr/bioinfo/ifremer/sebimer/tools/ORSON/](https://data-dataref.ifremer.fr/bioinfo/ifremer/sebimer/tools/ORSON/) to get the lattest combined image of BeeDeeM and [BeeDeeM-Tools](https://gitlab.ifremer.fr/bioinfo/BeeDeeM-Tools); look at 'beedeem-.sif' file. +Official pre-built images of BeeDeeM are available from [Ifremer-SeBiMER Gitlab container repository](https://gitlab.ifremer.fr/bioinfo/softwares/public-images). + +For instance, to get the 5.0.0 release, run this command (isit [BeeDeeM container registry](https://gitlab.ifremer.fr/bioinfo/softwares/public-images/beedeem/container_registry) to review latest available version of BeeDeeM): + +``` +singularity pull docker://gitlab-registry.ifremer.fr/bioinfo/softwares/public-images/beedeem/beedeem:5.0.0 +``` + +to get and rename under beedeem:5.0.0 the combined image of BeeDeeM and [BeeDeeM-Tools](https://gitlab.ifremer.fr/bioinfo/BeeDeeM-Tools). + +Then, to run the image: + +```singularity run beedeem_5.0.0.sif bdm -h``` How to build? ------------- @@ -16,7 +28,7 @@ How to run? ----------- See test_container.sh script for a working example. -_ + How to configure? -----------------