From c1f4bc5f97f14a0c0ce6e29e31c61a5cb6c98934 Mon Sep 17 00:00:00 2001 From: galaxy Date: Mon, 22 Apr 2024 14:59:46 +0000 Subject: [PATCH] install procps to be expected by Nextflow --- singularity/Singularity | 5 +++-- singularity/Singularity.local | 3 ++- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/singularity/Singularity b/singularity/Singularity index 90586ce..c1520e4 100644 --- a/singularity/Singularity +++ b/singularity/Singularity @@ -9,7 +9,7 @@ Bootstrap : docker From: debian:11-slim %post - BDM_VERSION=5.0.0 + BDM_VERSION=5.0.1 BDMT_VERSION=2.1.2 # software-properties-common required to install Java Runtime @@ -18,8 +18,9 @@ From: debian:11-slim # in BeeDeeM and BeeDeeM-Tools. # bash is required when running this image by Nextflow pipelines. # wget is required to install some banks (e.g. GeneOntology). + # procps (ps command) is required by Nextflow. apt-get -y update - apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip + apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip procps # Java # See https://www.oracle.com/java/technologies/downloads/#java17 diff --git a/singularity/Singularity.local b/singularity/Singularity.local index 7ed1bff..933426e 100644 --- a/singularity/Singularity.local +++ b/singularity/Singularity.local @@ -29,8 +29,9 @@ From: debian:11-slim # in BeeDeeM and BeeDeeM-Tools. # bash is required when running this image by Nextflow pipelines. # wget is required to install some banks (e.g. GeneOntology). + # procps (ps command) is required by Nextflow. apt-get -y update - apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip + apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip procps # Java # See https://www.oracle.com/java/technologies/downloads/#java17