From 99803c8559750e19274cbbd4aa2f510ea249afd8 Mon Sep 17 00:00:00 2001
From: Finlay Maguire <finlaymaguire@gmail.com>
Date: Tue, 17 Oct 2023 22:05:07 -0300
Subject: [PATCH] Fix linting

---
 hAMRonization/AmrFinderPlusIO.py | 1 -
 hAMRonization/summarize.py       | 1 -
 2 files changed, 2 deletions(-)

diff --git a/hAMRonization/AmrFinderPlusIO.py b/hAMRonization/AmrFinderPlusIO.py
index 25aa61b..495a1ea 100644
--- a/hAMRonization/AmrFinderPlusIO.py
+++ b/hAMRonization/AmrFinderPlusIO.py
@@ -134,4 +134,3 @@ def parse(self, handle):
         if skipped_truncated > 0:
             warnings.warn(f"Skipping {skipped_truncated} records with INTERNAL_STOP "
                           f"from {self.metadata['input_file_name']}")
-
diff --git a/hAMRonization/summarize.py b/hAMRonization/summarize.py
index 2e66dad..b85b92c 100644
--- a/hAMRonization/summarize.py
+++ b/hAMRonization/summarize.py
@@ -745,7 +745,6 @@ def summarize_reports(report_paths, summary_type, output_path=None):
             file=sys.stderr,
         )
 
-
     # sort records by input_file_name, tool_config i.e. toolname, version,
     # db_name, db_versions, and then within that by gene_symbol
     combined_reports = combined_reports.sort_values(