README.md

sendSummarizer

sendSummarizer is an R package includes functions to calculate toxicity score of a given repeat-dose toxicological study.

• paper

• paper link

• Poster

• poster

Installation

# Install from GitHub
install.packages("devtools")
devtools::install_github('phuse-org/send-summarizer')

for development

clone the repo and follow the instructions.

setwd('send-summarizer')
devtools::load_all(".")
sendSummarizer::send_cross_study_app('path_database.db')

more example

path_db <- "C:/directory/send.db"
studyid <- '112344'

# app
send_cross_study_app(path_db)

# score
mi_score <- get_mi_score(studyid, path_db)
mi_score


lb_score <- get_lb_score(studyid, path_db)
lb_score

bw_score <- get_bw_score(studyid, path_db)
bw_score

all_score <- get_all_score(studyid, path_db, domain = c('lb', 'bw', 'mi'))
all_score

compile <- get_compile_data(studyid, path_db)
compile