- Add sgRNA information as output
- Add pseudocounts for LFC calculation (
perturb-tools>=0.3.5
)
- Change .pyx files to be compatible with more recent numpy versions
- CRITICAL Fix sample ordering & masking issue for survival screens
- Fix overflow in
bean run survival
and autograde error related to inplace assignment forbean run survival tiling
.
- Allow
bean run .. tiling
for untranslated--allele-df-key
.