metadata.yaml

---
title: "BrAPI v2 - A unified framework for data integration and collaboration for breeding and genetic resources"
date: null  # Defaults to date generated, but can specify like '2022-10-31'.
keywords:
  - brapi
  - breeding
  - api
  - standards
  - community
lang: en-US
authors:
  - name: Peter Selby
    initials: PS
    github: BrapiCoordinatorSelby
    orcid: 0000-0001-7151-4445
    email: ps664@cornell.edu
    corresponding: true
    affiliations:
      - Cornell University
    funders: 
      - The BrAPI Project is funded by the USDA grant NIFA-DSFAS 2022-67021-37024.
  - name: Rafael Abbeloos
    initials: RA
    github: raabb
    orcid: 0000-0002-0177-3887
    email: rafael.abbeloos@vib.be
    corresponding: false
    affiliations:
      - VIB Agro-Incubator
  - name: Anne-Francoise Adam-Blondon
    initials: AFAB
    orcid: 0000-0002-3412-9086
    email: anne-francoise.adam-blondon@inrae.fr
    corresponding: false
    affiliations:
      - Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, 78026, Versailles, France
      - Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
  - name: Francisco J. Agosto-Pérez
    initials: FJAP
    github: agostof
    orcid: 0000-0002-5059-253X
    email: fja32@cornell.edu 
    corresponding: false
    affiliations:
      - Cornell University
    funders: 
      - 'Innovation Lab for Crop Improvement Cornell, ILCI: 7200AA19LE00005, FFAR: CA20-SS-0000000103'
  - name: Michael Alaux
    initials: MA
    orcid: 0000-0001-9356-4072
    email: michael.alaux@inrae.fr
    corresponding: false
    affiliations:
      - Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, 78026, Versailles, France
      - Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
    funders: 
      - The AGENT project is funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862613.
  - name: Isabelle Alic
    initials: IA
    github: Isabelle-inrae
    orcid: 0000-0002-8961-6068
    email: isabelle.alic@inrae.fr
    corresponding: false
    affiliations:
      - MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
  - name: Khaled Al-Shamaa
    initials: KS
    github: khaled-alshamaa
    orcid: 0000-0002-7668-3798
    email: k.el-shamaa@cgiar.org
    corresponding: false
    affiliations:
      - ICARDA
  - name: Johan Steven Aparicio
    initials: JSA
    email: J.Aparicio@cgiar.org
    corresponding: false
    affiliations:
      - Alliance Bioversity-CIAT
  - name: Jan Erik Backlund
    initials: JEB
    email: j.backlund@integratedbreeding.net
    corresponding: false
    affiliations:
      - Integrated Breeding Platform
  - name: Aldrin Batac
    initials: AB
    email: aldrin.batac@leafnode.io
    corresponding: false
    affiliations:
      - Integrated Breeding Platform
      - Leafnode LLC
  - name: Sebastian Beier
    initials: SB
    github: sebeier
    orcid: 0000-0002-2177-8781
    email: s.beier@fz-juelich.de
    corresponding: false
    affiliations:
      - 'Institute of Bio- and Geosciences (IBG-4: Bioinformatics), CEPLAS, Forschungszentrum Jülich GmbH, Wilhelm Johnen Straße, 52428 Jülich, Germany'
      - Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany
  - name: Gabriel Besombes
    initials: GB
    github: Gabriel-Besombes
    orcid: 0009-0004-1359-2145
    email: gabriel.besombes@inrae.fr
    corresponding: false
    affiliations:
      - MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
  - name: Alice Boizet
    initials: AB
    github: aliceboizet
    orcid: 0000-0003-4096-6689
    email: alice.boizet@cirad.fr
    corresponding: false
    affiliations:
      - CIRAD, UMR AGAP Institut, Montpellier, France.
      - AGAP Institut, CIRAD, INRAE, Institut Agro, Université de Montpellier, Montpellier, France.
  - name: Matthijs Brouwer
    initials: MB
    github: matthijsbrouwer
    orcid: 0000-0001-8183-0484
    email: matthijs.brouwer@wur.nl
    corresponding: false
    affiliations:
      - Wageningen University and Research
  - name: Terry Casstevens
    initials: TC
    github: tcasstevens
    orcid: 0000-0001-7602-0487
    email: tmc46@cornell.edu
    corresponding: false
    affiliations:
      - Buckler Lab and Institute for Genomic Diversity, Cornell University
  - name: Arnaud Charleroy
    initials: AC
    github: niio972
    orcid: 0009-0009-7575-3617
    email: arnaud.charleroy@inrae.fr
    corresponding: false
    affiliations:
      - MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
  - name: Keo Corak
    initials: KC
    github: keocorak
    orcid: 0000-0002-4129-3319
    email: kecorak@ncsu.edu
    corresponding: false
    affiliations:
      - USDA-ARS Genomics and Bioinformatics Research Unit 
  - name: Chaney Courtney
    initials: CC
    github: chaneylc
    email: ccourtn@clemson.edu
    corresponding: false
    affiliations:
      - Clemson University
  - name: Mariano Crimi
    initials: MC
    email: m.crimi@integratedbreeding.net
    corresponding: false
    affiliations:
      - Integrated Breeding Platform
  - name: Gouripriya Davuluri
    initials: GD
    github: Gouripriya5
    orcid: 0009-0005-2308-0773
    email: Gouripriya.Davuluri@leibniz-ipk.de
    corresponding: false
    affiliations:
      - Leibniz Institute of Plant Genetics and Crop Plant Research
    funders: 
      - The AGENT project is funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862613.
  - name: Kauê de Sousa
    initials: KDS
    github: kauedesousa
    orcid: 0000-0002-7571-7845
    email: k.desousa@cgiar.org
    corresponding: false
    affiliations:
      - Digital Inclusion, Bioversity International, Montpellier, France
  - name: Jeremy Destin
    initials: JD
    email: jeremy.destin3@gmail.com
    corresponding: false
    affiliations:
      - Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, 78026, Versailles, France
      - Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
  - name: Stijn Dhondt
    initials: SD
    orcid: 0000-0003-4402-2191
    email: stijn.dhondt@vib.be
    corresponding: false
    affiliations:
      - VIB Agro-Incubator
  - name: Ajay Dhungana
    initials: AD
    github: GenAjay
    email: adhung4@lsu.edu
    corresponding: false
    affiliations:
      - Louisiana State University (LSU)
  - name: Bert Droesbeke
    initials: BD
    github: bedroesb
    orcid: 0000-0003-0522-5674
    email: bert.droesbeke@vib.be
    corresponding: false
    affiliations:
      - VIB Data Core
  - name: Manuel Feser
    initials: MF
    github: feserm
    orcid: 0000-0001-6546-1818
    email: feser@ipk-gatersleben.de
    corresponding: false
    affiliations:
      - Leibniz Institute of Plant Genetics and Crop Plant Research
      - Graduate School DILS, Bielefeld Institute for Bioinformatics Infrastructure (BIBI)
  - name: Mirella Flores-Gonzalez
    initials: MFG
    github: mflores202
    orcid: 0000-0002-7759-1617
    email: mrf252@cornell.edu
    corresponding: false
    affiliations:
      - The Boyce Thompson Institute
  - name: Valentin Guignon
    initials: VG
    github: guignonv
    orcid: 0000-0003-0903-6811
    email: v.guignon@cgiar.org
    corresponding: false
    affiliations:
      - Digital Inclusion, Bioversity International, Montpellier, France
  - name: Corina Habito
    initials: CH
    email: c.habito@integratedbreeding.net
    corresponding: false
    affiliations:
      - Integrated Breeding Platform
  - name: Asis Hallab
    initials: AH
    github: asishallab
    orcid: 0000-0002-2421-5431
    email: a.hallab@fz-juelich.de
    corresponding: false
    affiliations:
      - 'Institute of Bio- and Geosciences (IBG-4: Bioinformatics), CEPLAS, Forschungszentrum Jülich GmbH, Wilhelm Johnen Straße, 52428 Jülich, Germany'
      - Bingen Technical University of Applied Sciences, Berlinstraße 109, 55411 Bingen am Rhein, Germany
  - name: Jenna Hershberger
    initials: JH
    github: jmh579
    orcid: 0000-0002-3147-6867
    email: jmhersh@clemson.edu
    corresponding: false
    affiliations:
      - Clemson University
  - name: Puthick Hok
    initials: PH
    github: puthick
    email: puthick@diversityarrays.com
    corresponding: false
    affiliations:
      - Diversity Arrays Technology (DArT)
  - name: Amanda M. Hulse-Kemp
    initials: AMHK
    github: ahulsekemp
    orcid: 0000-0001-9670-9433
    email: amanda.hulse-kemp@usda.gov
    corresponding: false
    affiliations:
      - USDA-ARS Genomics and Bioinformatics Research Unit
  - name: Lynn Carol Johnson
    initials: LCJ
    orcid: 0000-0001-8103-2722
    email: lcj34@cornell.edu
    corresponding: false
    affiliations:
      - Buckler Lab and Institute for Genomic Diversity, Cornell University
  - name: Sook Jung
    initials: SJ
    orcid: 0000-0003-3968-2769
    email: sook_jung@wsu.edu
    corresponding: false
    affiliations:
      - Department of Horticulture, Washington State University
    funders: 
      - USDA National Institute of Food and Agriculture National Research Support Project 10
  - name: Paul Kersey
    initials: PK
    email: P.Kersey@kew.org
    corresponding: false
    affiliations:
      - Royal Botanic Gardens, Kew
    funders: 
      - The AGENT project is funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862613.
  - name: Andrzej Kilian
    initials: AK
    email: zej@diversityarrays.com
    corresponding: false
    affiliations:
      - Diversity Arrays Technology (DArT)
  - name: Patrick König
    initials: PK
    github: patrick-koenig
    orcid: 0000-0002-8948-6793
    email: koenig@ipk-gatersleben.de
    corresponding: false
    affiliations:
      - Leibniz Institute of Plant Genetics and Crop Plant Research
    funders: 
      - The SHAPE3 project is funded by a grant from the German Ministry of Research and Education (BMBF, FKZ 031B1302A).
  - name: Suman Kumar
    initials: SK
    github: sumankumar1
    orcid: 0009-0005-5832-7190
    email: Suman.Kumar@leibniz-ipk.de
    corresponding: false
    affiliations:
      - Leibniz Institute of Plant Genetics and Crop Plant Research
    funders: 
      - The AGENT project is funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862613.
  - name: Josh Lamos-Sweeney
    initials: JDLS
    github: jlamossweeney
    email: jdl232@cornell.edu
    corresponding: false
    affiliations:
      - Cornell University
  - name: Laszlo Lang
    initials: LL
    github: LzLang
    orcid: 0009-0009-8936-4532
    email: laszlo.lang@stud.th-bingen.de
    corresponding: false
    affiliations:
      - Bingen Technical University of Applied Sciences, Berlinstraße 109, 55411 Bingen am Rhein, Germany
  - name: Matthias Lange
    initials: ML
    github: langeipk
    orcid: 0000-0002-4316-078X
    email: lange@ipk-gatersleben.de
    corresponding: false
    affiliations:
      - Leibniz Institute of Plant Genetics and Crop Plant Research
    funders: 
      - The AGENT project is funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862613.
  - name: Marie-Angélique Laporte
    initials: MAL
    github: marieALaporte
    orcid: 0000-0002-8461-9745
    email: m.a.laporte@cgiar.org
    corresponding: false
    affiliations:
      - Digital Inclusion, Bioversity International, Montpellier, France
  - name: Taein Lee
    initials: TL
    github: leetaei
    orcid: 0000-0002-2000-2586
    email: taein_lee@hotmail.com
    corresponding: false
    affiliations:
      - Department of Horticulture, Washington State University
  - name: Erwan Le Floch
    initials: ELF
    github: erlefloch
    orcid: 0000-0002-1010-6859
    email: erwan.le-floch@inrae.fr
    corresponding: false
    affiliations:
      - Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, 78026, Versailles, France
      - Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France   
  - name: Francisco López
    initials: FL
    email: francisco.lopez@fao.org
    corresponding: false
    affiliations:
      - International Treaty on Plant Genetic Resources for Food and Agriculture, FAO
  - name: Brandon Madriz
    initials: BM
    email: bmadriz@mrbotcr.com
    corresponding: false
    affiliations:
      - MrBot Software Solutions, Cartago, Costa Rica
  - name: Dorrie Main
    initials: DM
    orcid: 0000-0002-1162-2724
    email: dorrie@wsu.edu
    corresponding: false
    affiliations:
      - Department of Horticulture, Washington State University
    funders: 
      - USDA NIFA: 2022-51181-38449
  - name: Marco Marsella
    initials: MM
    orcid: 0000-0003-0334-8785
    email: marco.marsella@fao.org
    corresponding: false
    affiliations:
      - International Treaty on Plant Genetic Resources for Food and Agriculture, FAO
  - name: Maud Marty
    initials: MM
    github: maudmarty
    orcid: 0009-0001-8764-6466
    email: maud.marty@inrae.fr
    corresponding: false
    affiliations:
      - Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, 78026, Versailles, France
      - Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
  - name: Célia Michotey
    initials: CM
    github: cmichotey
    orcid: 0000-0003-1877-1703
    email: celia.michotey@inrae.fr
    corresponding: false
    affiliations:
      - Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, 78026, Versailles, France
      - Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
  - name: Zachary Miller
    initials: ZM
    github: zrm22
    orcid: 0000-0002-5454-4527
    email: zrm22@cornell.edu
    corresponding: false
    affiliations:
      - Buckler Lab and Institute for Genomic Diversity, Cornell University
  - name: Iain Milne
    initials: IM
    github: imilne
    orcid: 0000-0002-4126-0859
    email: iain.milne@hutton.ac.uk
    corresponding: false
    affiliations:
      - The James Hutton Institute
  - name: Lukas A. Mueller
    initials: LAM
    github: lukasmueller
    orcid: 0000-0001-8640-1750
    email: lam87@cornell.edu
    corresponding: false
    affiliations:
      - The Boyce Thompson Institute
  - name: Moses Nderitu
    initials: MN
    github: jndmose
    email: m.nderitu@seqart.net
    corresponding: false
    affiliations:
      - SEQART AFRICA
  - name: Pascal Neveu
    initials: PN
    github: pascalneveu
    orcid: 0000-0003-4189-7793
    email: pascal.neveu@inrae.fr
    corresponding: false
    affiliations:
      - MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
    funders: 
      - This work was supported by the Agence Nationale de la Recherche, programme Investissements d'avenir, ANR-11-INBS-0012 (Phenome)      
  - name: Nick Palladino
    initials: NP
    github: nickpalladino
    orcid: 0009-0009-1645-297X
    email: np398@cornell.edu
    corresponding: false
    affiliations:
      - Breeding Insight, Cornell University
    funders: 
      - U.S. Department of Agriculture, under agreement numbers [8062-21000-043-004-A, 8062-21000-052-002-A, and 8062-21000-052-003-A]
  - name: Tim Parsons
    initials: TEP
    github: timparsons
    orcid: 0000-0001-6209-2455
    email: tim@timparsons.io
    corresponding: false
    affiliations:
      - Breeding Insight, Cornell University
    funders: 
      - U.S. Department of Agriculture, under agreement numbers [8062-21000-043-004-A, 8062-21000-052-002-A, and 8062-21000-052-003-A]
  - name: Cyril Pommier
    initials: CP
    github: cpommier
    orcid: 0000-0002-9040-8733
    email: cyril.pommier@inrae.fr
    corresponding: false
    affiliations:
      - Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, 78026, Versailles, France
      - Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France
  - name: Jean-François Rami
    initials: JFR
    github: jframi
    orcid: 0000-0002-5679-3877
    email: jean-francois.rami@cirad.fr
    corresponding: false
    affiliations:
      - CIRAD, UMR AGAP Institut, Montpellier, France.
      - AGAP Institut, CIRAD, INRAE, Institut Agro, Université de Montpellier, Montpellier, France.
  - name: Sebastian Raubach
    initials: SR
    github: sebastian-raubach
    orcid: 0000-0001-5659-247X
    email: sebastian.raubach@hutton.ac.uk
    corresponding: false
    affiliations:
      - The James Hutton Institute
  - name: Trevor Rife
    initials: TR
    github: trife
    orcid: 0000-0002-5974-6523
    email: twrife@clemson.edu
    corresponding: false
    affiliations:
      - Clemson University
  - name: Kelly Robbins
    initials: KR
    orcid: 0000-0001-9522-9585
    email: krr73@cornell.edu
    corresponding: false
    affiliations:
      - Cornell University
    funders: 
      - The BrAPI Project is funded by the USDA grant NIFA-DSFAS 2022-67021-37024.
  - name: Mathieu Rouard
    initials: MR
    github: mrouard
    orcid: 0000-0003-0284-1885
    email: m.rouard@cgiar.org
    corresponding: false
    affiliations:
      - Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier, France
  - name: Joseph Ruff
    initials: JR
    github: JosephRuff
    email: J.Ruff@kew.org
    corresponding: false
    affiliations:
      - Royal Botanic Gardens, Kew
    funders: 
      - The AGENT project is funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862613.
  - name: Guilhem Sempéré
    initials: GS
    github: GuilhemSempere
    orcid: 0000-0001-7429-2091
    email: guilhem.sempere@cirad.fr
    corresponding: false
    affiliations:
      - CIRAD, UMR INTERTRYP, Montpellier, France INTERTRYP, Univ Montpellier, CIRAD, IRD, Montpellier, France French Institute of Bioinformatics (IFB) 
      - South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France
  - name: Romil Mayank Shah
    initials: RMS
    github: romil2807
    email: rmshah3@ncsu.edu
    corresponding: false
    affiliations:
      - North Carolina State University
  - name: Paul Shaw
    initials: PDS
    github: cardinalb
    orcid: 0000-0002-0202-1150
    email: paul.shaw@hutton.ac.uk
    corresponding: false
    affiliations:
      - The James Hutton Institute
  - name: Becky Smith
    initials: BS
    github: Batbaby91
    orcid: 0000-0002-8968-3383
    email: becky.smith@hutton.ac.uk
    corresponding: false
    affiliations:
      - The James Hutton Institute
  - name: Nahuel Soldevilla
    initials: NS
    email: n.soldevilla@integratedbreeding.net
    corresponding: false
    affiliations:
      - Integrated Breeding Platform
      - Leafnode LLC
  - name: Anne Tireau
    initials: AT
    github: annetireau
    orcid: 0000-0001-8501-6922
    email: anne.tireau@inrae.fr
    corresponding: false
    affiliations:
      - MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
  - name: Clarysabel Tovar
    initials: CT
    email: clarysabel@leafnode.io
    corresponding: false
    affiliations:
      - Integrated Breeding Platform
      - Leafnode LLC
  - name: Grzegorz Uszynski
    initials: GU
    github: grzegorz69
    email: grzegorz@diversityarrays.com
    corresponding: false
    affiliations:
      - Diversity Arrays Technology (DArT)
  - name: Vivian Bass Vega
    initials: VBV
    github: VivianBass
    orcid: 0009-0002-2476-9888
    email: vivbass4@gmail.com
    corresponding: false
    affiliations:
      - Bingen Technical University of Applied Sciences, Berlinstraße 109, 55411 Bingen am Rhein, Germany
  - name: Stephan Weise
    initials: SW
    orcid: 0000-0003-4031-9131
    email: weise@ipk-gatersleben.de
    corresponding: false
    affiliations:
      - Leibniz Institute of Plant Genetics and Crop Plant Research
    funders: 
      - The AGENT project is funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862613.
  - name: Shawn C. Yarnes
    initials: SCY 
    github: SCYarnes 
    orcid: 0000-0002-1090-0403 
    email: scy32@cornell.edu 
    corresponding: false
    affiliations:
      - Breeding Insight, Cornell University 
    funders: 
      - U.S. Department of Agriculture, under agreement numbers [8062-21000-043-004-A, 8062-21000-052-002-A, and 8062-21000-052-003-A]
  - name: The BrAPI Consortium
    initials: TBC
    corresponding: false
    affiliations:
      - The BrAPI Consortium