Apptainer.6.4.6-gpu

Bootstrap: docker
From: centos:7

%labels
Maintainer ben.warren@plantandfood.co.nz
Version 6.4.6-gpu

%post
  GUPPY_RPM="ont-guppy-6.4.6-1.el7.x86_64.rpm"
  curl -LO https://cdn.oxfordnanoportal.com/software/analysis/${GUPPY_RPM}
  ## Install from dependencies
  yum -y install epel-release
  yum -y install hdf5 libaec libgfortran libquadmath libsodium openpgm zeromq

  ## Force install ignoring the dependency on libcuda.so.1 (will be present at runtime)
  rpm -ivh --nodeps ${GUPPY_RPM}
  rm -f ${GUPPY_RPM}

%runscript
if [ -x /usr/bin/$APPTAINER_NAME ]; then
    exec $APPTAINER_NAME "$@"
else
  /bin/echo -e "This Apptainer image cannot provide a single entrypoint. Please use \"apptainer exec $APPTAINER_NAME <cmd>\", where <cmd> is one of the following:\n"
  exec ls /usr/bin/guppy*
fi