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        "<a href=\"https://colab.research.google.com/github/protontypes/AwesomeCure/blob/main/OpenSustain_topic_modeling.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
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        "# OpenSustain.tech Topic Modeling\n",
        "\n",
        "ToDO:\n",
        "* Create Topic Blacklist\n",
        "* Hierarchical Topic Modeling: https://maartengr.github.io/BERTopic/getting_started/hierarchicaltopics/hierarchicaltopics.html\n",
        "\n",
        "Maintainer Tips and Tricks:\n",
        "* Readme into sentences --> fine grant topics\n",
        "* Representation Model to have \"better\" words\n",
        "* Example to use: https://maartengr.github.io/BERTopic/getting_started/representation/representation.html#keybertinspired --> 10 words per topics -->\n",
        "* Parse -->GPT4\n",
        "\n"
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            "\u001b[?25h  Installing build dependencies ... \u001b[?25l\u001b[?25hdone\n",
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            "\u001b[?25hCollecting huggingface-hub>=0.4.0 (from sentence-transformers>=0.4.1->bertopic)\n",
            "  Downloading huggingface_hub-0.15.1-py3-none-any.whl (236 kB)\n",
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            "  Downloading pynndescent-0.5.10.tar.gz (1.1 MB)\n",
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            "Collecting tokenizers!=0.11.3,<0.14,>=0.11.1 (from transformers<5.0.0,>=4.6.0->sentence-transformers>=0.4.1->bertopic)\n",
            "  Downloading tokenizers-0.13.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.8 MB)\n",
            "\u001b[2K     \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m7.8/7.8 MB\u001b[0m \u001b[31m78.6 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
            "\u001b[?25hCollecting safetensors>=0.3.1 (from transformers<5.0.0,>=4.6.0->sentence-transformers>=0.4.1->bertopic)\n",
            "  Downloading safetensors-0.3.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB)\n",
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            "Requirement already satisfied: charset-normalizer~=2.0.0 in /usr/local/lib/python3.10/dist-packages (from requests->huggingface-hub>=0.4.0->sentence-transformers>=0.4.1->bertopic) (2.0.12)\n",
            "Requirement already satisfied: idna<4,>=2.5 in /usr/local/lib/python3.10/dist-packages (from requests->huggingface-hub>=0.4.0->sentence-transformers>=0.4.1->bertopic) (3.4)\n",
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            "Building wheels for collected packages: keybert, hdbscan, sentence-transformers, umap-learn, pynndescent\n",
            "  Building wheel for keybert (setup.py) ... \u001b[?25l\u001b[?25hdone\n",
            "  Created wheel for keybert: filename=keybert-0.7.0-py3-none-any.whl size=23777 sha256=20d191446959d42ea42e0d918df3357b2e895191b97f60c67d9745076072cf17\n",
            "  Stored in directory: /root/.cache/pip/wheels/66/8d/e6/b0e2f8d883b0fd51819226f67ad9843e04913ce4a97241ff4b\n",
            "  Building wheel for hdbscan (pyproject.toml) ... \u001b[?25l\u001b[?25hdone\n",
            "  Created wheel for hdbscan: filename=hdbscan-0.8.29-cp310-cp310-linux_x86_64.whl size=3541997 sha256=8a3cec6739794d152129346c3ba212ff91c78871605120b57a018242dfef0365\n",
            "  Stored in directory: /root/.cache/pip/wheels/dc/52/e3/6c6b60b126b4d5c4370cb5ac071b82950f91649d62d72f7f56\n",
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            "  Created wheel for sentence-transformers: filename=sentence_transformers-2.2.2-py3-none-any.whl size=125926 sha256=bc853e62dd2d07c13d6a8980c319311ad41a36bcdfbb3970f2a0d0b7a65e21ab\n",
            "  Stored in directory: /root/.cache/pip/wheels/62/f2/10/1e606fd5f02395388f74e7462910fe851042f97238cbbd902f\n",
            "  Building wheel for umap-learn (setup.py) ... \u001b[?25l\u001b[?25hdone\n",
            "  Created wheel for umap-learn: filename=umap_learn-0.5.3-py3-none-any.whl size=82816 sha256=4b04ef3932981b065fe119e57698611f31293d04031a48f574074466e5aa4814\n",
            "  Stored in directory: /root/.cache/pip/wheels/a0/e8/c6/a37ea663620bd5200ea1ba0907ab3c217042c1d035ef606acc\n",
            "  Building wheel for pynndescent (setup.py) ... \u001b[?25l\u001b[?25hdone\n",
            "  Created wheel for pynndescent: filename=pynndescent-0.5.10-py3-none-any.whl size=55622 sha256=34f48364e81106f80c0dabaf35aabf75a3afb2dbddad65738660d17696c16449\n",
            "  Stored in directory: /root/.cache/pip/wheels/4a/38/5d/f60a40a66a9512b7e5e83517ebc2d1b42d857be97d135f1096\n",
            "Successfully built keybert hdbscan sentence-transformers umap-learn pynndescent\n",
            "Installing collected packages: tokenizers, sentencepiece, safetensors, huggingface-hub, transformers, pynndescent, hdbscan, umap-learn, sentence-transformers, keybert, bertopic\n",
            "Successfully installed bertopic-0.15.0 hdbscan-0.8.29 huggingface-hub-0.15.1 keybert-0.7.0 pynndescent-0.5.10 safetensors-0.3.1 sentence-transformers-2.2.2 sentencepiece-0.1.99 tokenizers-0.13.3 transformers-4.30.2 umap-learn-0.5.3\n",
            "--2023-06-28 12:34:39--  https://raw.githubusercontent.com/protontypes/AwesomeCure/main/csv/projects.csv\n",
            "Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.110.133, ...\n",
            "Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.\n",
            "HTTP request sent, awaiting response... 200 OK\n",
            "Length: 11132842 (11M) [text/plain]\n",
            "Saving to: ‘projects.csv’\n",
            "\n",
            "projects.csv        100%[===================>]  10.62M  --.-KB/s    in 0.06s   \n",
            "\n",
            "2023-06-28 12:34:39 (186 MB/s) - ‘projects.csv’ saved [11132842/11132842]\n",
            "\n"
          ]
        }
      ],
      "source": [
        "!pip install bertopic keybert pandas\n",
        "!wget https://raw.githubusercontent.com/protontypes/AwesomeCure/main/csv/projects.csv"
      ]
    },
    {
      "cell_type": "markdown",
      "source": [
        "## Reconfigure CSV Readin"
      ],
      "metadata": {
        "id": "Ikr6z58-JiyI"
      }
    },
    {
      "cell_type": "code",
      "source": [
        "import pandas as pd\n",
        "import sys\n",
        "import csv\n",
        "\n",
        "maxInt = sys.maxsize\n",
        "\n",
        "# find the largest possible file size\n",
        "while True:\n",
        "    try:\n",
        "        csv.field_size_limit(maxInt)\n",
        "        break\n",
        "    except OverflowError:\n",
        "        maxInt = int(maxInt/10)\n",
        "df = pd.read_csv(\"projects.csv\", engine='python')"
      ],
      "metadata": {
        "id": "oN1e0vG6oaTN"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [],
      "metadata": {
        "id": "Rzbszp_d_CRt",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "80aa8f27-3a77-4ef7-9ccc-c1300c54e951"
      },
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "name": "stderr",
          "text": [
            "[nltk_data] Downloading package punkt to /root/nltk_data...\n",
            "[nltk_data]   Package punkt is already up-to-date!\n"
          ]
        }
      ]
    },
    {
      "cell_type": "code",
      "source": [
        "from torch.utils.data import dataloader\n",
        "import re\n",
        "from bs4 import BeautifulSoup\n",
        "from nltk.tokenize import sent_tokenize, word_tokenize\n",
        "import nltk\n",
        "nltk.download('punkt')\n",
        "\n",
        "data = pd.DataFrame(columns=[\"Sentence\", \"Readme\"])\n",
        "readmes = [str(doc) for doc in df.readme.tolist()]\n",
        "\n",
        "sentences_cleaned = []\n",
        "for index, readme in enumerate(readmes):\n",
        "  sents = sent_tokenize(re.sub(' +', ' ', BeautifulSoup(readme, \"lxml\").text.replace(r\"\\n\", \"\")))\n",
        "  sentences_cleaned.extend(sents)\n",
        "\n",
        "  for sentence in sents:\n",
        "    data.loc[len(data), :] = [sentence, index]"
      ],
      "metadata": {
        "id": "Y_Z4-ZPv_Dk_",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "c7035192-35df-4262-8dbd-f027f8fc22bc"
      },
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "name": "stderr",
          "text": [
            "[nltk_data] Downloading package punkt to /root/nltk_data...\n",
            "[nltk_data]   Package punkt is already up-to-date!\n"
          ]
        }
      ]
    },
    {
      "cell_type": "code",
      "source": [
        "from bertopic.representation import KeyBERTInspired\n",
        "from bertopic import BERTopic\n",
        "\n",
        "# Create your representation model\n",
        "representation_model = KeyBERTInspired()\n",
        "\n",
        "# Use the representation model in BERTopic on top of the default pipeline\n",
        "topic_model = BERTopic(representation_model=representation_model, verbose=True).fit(sentences_cleaned)\n",
        "data[\"Topic\"] = topic_model.topics_"
      ],
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 550,
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          "text": [
            "2023-06-28 12:45:59,392 - BERTopic - Transformed documents to Embeddings\n",
            "2023-06-28 12:46:40,458 - BERTopic - Reduced dimensionality\n",
            "2023-06-28 12:46:43,943 - BERTopic - Clustered reduced embeddings\n"
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              "    Topic  Count                                               Name  \\\n",
              "0      -1  12079                      -1_python_import_file_dataset   \n",
              "1       0    366       0_conda_environmentconda_condaforge_anaconda   \n",
              "2       1    335                1_rprofile_rstudio_packages_package   \n",
              "3       2    334                      2_trees_forestry_forests_tree   \n",
              "4       3    330          3_photovoltaics_photovoltaic_pv_pvfactors   \n",
              "5       4    249  4_github_statushttpsgithubcomjwcooknaturtagwor...   \n",
              "6       5    226  5_contributions_contributionsfrom_contribution...   \n",
              "7       6    217  6_timeseries_timeseriesclustering_datetime_tim...   \n",
              "8       7    191  7_dockerfile_docker_dockercompose_dockercompos...   \n",
              "9       8    181             8_netcdf_netcdf4python_netcdf3_netcdf4   \n",
              "10      9    159                     9_models_modelica_modela_model   \n",
              "11     10    155  10_installer_installing_installationthere_install   \n",
              "12     11    153        11_windpowerlib_turbines_turbine_windfarmga   \n",
              "13     12    151       12_climate_projects_sustainability_emissions   \n",
              "14     13    150                                          13_nan___   \n",
              "15     14    150                        14_471979_451067_477_449169   \n",
              "16     15    147                   15_scale_alpha_rescaling_replace   \n",
              "17     16    140         16_seismic_geophysical_geologic_geological   \n",
              "18     17    134             17_emissions_emissionfile_emission_co2   \n",
              "19     18    131               18_soils_soil_soilhealthdb_soilgrids   \n",
              "\n",
              "                                       Representation  \\\n",
              "0   [python, import, file, dataset, datasets, soft...   \n",
              "1   [conda, environmentconda, condaforge, anaconda...   \n",
              "2   [rprofile, rstudio, packages, package, github,...   \n",
              "3   [trees, forestry, forests, tree, treels, treei...   \n",
              "4   [photovoltaics, photovoltaic, pv, pvfactors, p...   \n",
              "5   [github, statushttpsgithubcomjwcooknaturtagwor...   \n",
              "6   [contributions, contributionsfrom, contributio...   \n",
              "7   [timeseries, timeseriesclustering, datetime, t...   \n",
              "8   [dockerfile, docker, dockercompose, dockercomp...   \n",
              "9   [netcdf, netcdf4python, netcdf3, netcdf4, netc...   \n",
              "10  [models, modelica, modela, model, vic, modelin...   \n",
              "11  [installer, installing, installationthere, ins...   \n",
              "12  [windpowerlib, turbines, turbine, windfarmga, ...   \n",
              "13  [climate, projects, sustainability, emissions,...   \n",
              "14                            [nan, , , , , , , , , ]   \n",
              "15  [471979, 451067, 477, 449169, 486675, 4814, 31...   \n",
              "16  [scale, alpha, rescaling, replace, cstage, bhy...   \n",
              "17  [seismic, geophysical, geologic, geological, g...   \n",
              "18  [emissions, emissionfile, emission, co2, exhau...   \n",
              "19  [soils, soil, soilhealthdb, soilgrids, soilhea...   \n",
              "\n",
              "                                  Representative_Docs  \n",
              "0   [Here, we provide a first example but you can ...  \n",
              "1   [Activate this environment: `conda activate qu...  \n",
              "2   [When it is necessary to add a reference to an...  \n",
              "3   [The data enables accurate reporting of tree c...  \n",
              "4   [These features are actively under development...  \n",
              "5   [[](https://github.com/NREL/EnergyPlus/workflo...  \n",
              "6   [Contributions of any kind welcome!, Contribut...  \n",
              "7   [Image years correspond to the _end_ period of...  \n",
              "8   [Run from a Docker Container:#### 1.1 Get the ...  \n",
              "9   [b'Unidata NetCDF Fortran Library=============...  \n",
              "10  [The VIC model is an open source development p...  \n",
              "11  [Output data analysis.### Software Installatio...  \n",
              "12  [See `Initialize wind turbine` in `Examples se...  \n",
              "13  [Add your project to the [Greenlist](greenlist...  \n",
              "14                                    [nan, nan, nan]  \n",
              "15  [5226 171#> 8 8651 1 0105~ \"\" hyba~ 4811 974.,...  \n",
              "16  [b'# Awesome Earth !, Adding another scale for...  \n",
              "17  [[C++](media/icon/cplusplus.png) open source p...  \n",
              "18  [Though it is a general-purpose model, it is c...  \n",
              "19  [Data connections (CART-NPAD): [Click here](ht...  "
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              "      <th></th>\n",
              "      <th>Topic</th>\n",
              "      <th>Count</th>\n",
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              "      <th>Representation</th>\n",
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              "      <th>0</th>\n",
              "      <td>-1</td>\n",
              "      <td>12079</td>\n",
              "      <td>-1_python_import_file_dataset</td>\n",
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              "      <td>[Here, we provide a first example but you can ...</td>\n",
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              "      <th>1</th>\n",
              "      <td>0</td>\n",
              "      <td>366</td>\n",
              "      <td>0_conda_environmentconda_condaforge_anaconda</td>\n",
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              "      <td>[Activate this environment: `conda activate qu...</td>\n",
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              "      <td>[rprofile, rstudio, packages, package, github,...</td>\n",
              "      <td>[When it is necessary to add a reference to an...</td>\n",
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              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>2</td>\n",
              "      <td>334</td>\n",
              "      <td>2_trees_forestry_forests_tree</td>\n",
              "      <td>[trees, forestry, forests, tree, treels, treei...</td>\n",
              "      <td>[The data enables accurate reporting of tree c...</td>\n",
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              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>3</td>\n",
              "      <td>330</td>\n",
              "      <td>3_photovoltaics_photovoltaic_pv_pvfactors</td>\n",
              "      <td>[photovoltaics, photovoltaic, pv, pvfactors, p...</td>\n",
              "      <td>[These features are actively under development...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>5</th>\n",
              "      <td>4</td>\n",
              "      <td>249</td>\n",
              "      <td>4_github_statushttpsgithubcomjwcooknaturtagwor...</td>\n",
              "      <td>[github, statushttpsgithubcomjwcooknaturtagwor...</td>\n",
              "      <td>[[](https://github.com/NREL/EnergyPlus/workflo...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>6</th>\n",
              "      <td>5</td>\n",
              "      <td>226</td>\n",
              "      <td>5_contributions_contributionsfrom_contribution...</td>\n",
              "      <td>[contributions, contributionsfrom, contributio...</td>\n",
              "      <td>[Contributions of any kind welcome!, Contribut...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>7</th>\n",
              "      <td>6</td>\n",
              "      <td>217</td>\n",
              "      <td>6_timeseries_timeseriesclustering_datetime_tim...</td>\n",
              "      <td>[timeseries, timeseriesclustering, datetime, t...</td>\n",
              "      <td>[Image years correspond to the _end_ period of...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>8</th>\n",
              "      <td>7</td>\n",
              "      <td>191</td>\n",
              "      <td>7_dockerfile_docker_dockercompose_dockercompos...</td>\n",
              "      <td>[dockerfile, docker, dockercompose, dockercomp...</td>\n",
              "      <td>[Run from a Docker Container:#### 1.1 Get the ...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>9</th>\n",
              "      <td>8</td>\n",
              "      <td>181</td>\n",
              "      <td>8_netcdf_netcdf4python_netcdf3_netcdf4</td>\n",
              "      <td>[netcdf, netcdf4python, netcdf3, netcdf4, netc...</td>\n",
              "      <td>[b'Unidata NetCDF Fortran Library=============...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>10</th>\n",
              "      <td>9</td>\n",
              "      <td>159</td>\n",
              "      <td>9_models_modelica_modela_model</td>\n",
              "      <td>[models, modelica, modela, model, vic, modelin...</td>\n",
              "      <td>[The VIC model is an open source development p...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>11</th>\n",
              "      <td>10</td>\n",
              "      <td>155</td>\n",
              "      <td>10_installer_installing_installationthere_install</td>\n",
              "      <td>[installer, installing, installationthere, ins...</td>\n",
              "      <td>[Output data analysis.### Software Installatio...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>12</th>\n",
              "      <td>11</td>\n",
              "      <td>153</td>\n",
              "      <td>11_windpowerlib_turbines_turbine_windfarmga</td>\n",
              "      <td>[windpowerlib, turbines, turbine, windfarmga, ...</td>\n",
              "      <td>[See `Initialize wind turbine` in `Examples se...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>13</th>\n",
              "      <td>12</td>\n",
              "      <td>151</td>\n",
              "      <td>12_climate_projects_sustainability_emissions</td>\n",
              "      <td>[climate, projects, sustainability, emissions,...</td>\n",
              "      <td>[Add your project to the [Greenlist](greenlist...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>14</th>\n",
              "      <td>13</td>\n",
              "      <td>150</td>\n",
              "      <td>13_nan___</td>\n",
              "      <td>[nan, , , , , , , , , ]</td>\n",
              "      <td>[nan, nan, nan]</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>15</th>\n",
              "      <td>14</td>\n",
              "      <td>150</td>\n",
              "      <td>14_471979_451067_477_449169</td>\n",
              "      <td>[471979, 451067, 477, 449169, 486675, 4814, 31...</td>\n",
              "      <td>[5226 171#&gt; 8 8651 1 0105~ \"\" hyba~ 4811 974.,...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>16</th>\n",
              "      <td>15</td>\n",
              "      <td>147</td>\n",
              "      <td>15_scale_alpha_rescaling_replace</td>\n",
              "      <td>[scale, alpha, rescaling, replace, cstage, bhy...</td>\n",
              "      <td>[b'# Awesome Earth !, Adding another scale for...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>17</th>\n",
              "      <td>16</td>\n",
              "      <td>140</td>\n",
              "      <td>16_seismic_geophysical_geologic_geological</td>\n",
              "      <td>[seismic, geophysical, geologic, geological, g...</td>\n",
              "      <td>[[C++](media/icon/cplusplus.png) open source p...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>18</th>\n",
              "      <td>17</td>\n",
              "      <td>134</td>\n",
              "      <td>17_emissions_emissionfile_emission_co2</td>\n",
              "      <td>[emissions, emissionfile, emission, co2, exhau...</td>\n",
              "      <td>[Though it is a general-purpose model, it is c...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>19</th>\n",
              "      <td>18</td>\n",
              "      <td>131</td>\n",
              "      <td>18_soils_soil_soilhealthdb_soilgrids</td>\n",
              "      <td>[soils, soil, soilhealthdb, soilgrids, soilhea...</td>\n",
              "      <td>[Data connections (CART-NPAD): [Click here](ht...</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
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            ]
          },
          "metadata": {},
          "execution_count": 36
        }
      ]
    },
    {
      "cell_type": "code",
      "source": [
        "# # Calculate the topic distributions on a token-level\n",
        "# topic_distr, topic_token_distr = topic_model.approximate_distribution(docs[:2], calculate_tokens=True)\n",
        "\n",
        "# # Visualize the token-level distributions\n",
        "# df = topic_model.visualize_approximate_distribution(docs[1], topic_token_distr[1])\n",
        "# df\n"
      ],
      "metadata": {
        "id": "4XUj81AqDkLx"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "from sklearn.datasets import fetch_20newsgroups\n",
        "from sentence_transformers import SentenceTransformer\n",
        "from bertopic import BERTopic\n",
        "from umap import UMAP\n",
        "\n",
        "# Prepare embeddings\n",
        "docs = fetch_20newsgroups(subset='all',  remove=('headers', 'footers', 'quotes'))['data']\n",
        "sentence_model = SentenceTransformer(\"all-MiniLM-L6-v2\")\n",
        "embeddings = sentence_model.encode(docs, show_progress_bar=False)\n",
        "\n",
        "# Train BERTopic\n",
        "topic_model = BERTopic().fit(docs, embeddings)\n",
        "\n",
        "# Run the visualization with the original embeddings\n",
        "topic_model.visualize_documents(docs, embeddings=embeddings)\n",
        "\n",
        "# Reduce dimensionality of embeddings, this step is optional but much faster to perform iteratively:\n",
        "reduced_embeddings = UMAP(n_neighbors=10, n_components=2, min_dist=0.0, metric='cosine').fit_transform(embeddings)\n",
        "topic_model.visualize_documents(docs, reduced_embeddings=reduced_embeddings)\n"
      ],
      "metadata": {
        "id": "YDKVnACEDh2E"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "markdown",
      "source": [
        "## Preprocessing and Cleanup of dataset"
      ],
      "metadata": {
        "id": "TWJbXSjEJrpQ"
      }
    },
    {
      "cell_type": "code",
      "source": [
        "# Replace nan with empty strings in the readmes\n",
        "import numpy as np\n",
        "df = df.replace(np.inf, np.nan)\n",
        "df_readme = df['readme'].fillna('')\n",
        "docs = df_readme.to_list()\n",
        "\n",
        "# Replace nan with empty strings in topics\n",
        "df_topics = df[\"topics\"].fillna('')\n",
        "supervised_topics = df_topics.to_list()\n",
        "\n",
        "# create a subset of the dataset to speedup the processing\n",
        "docs_subset = docs"
      ],
      "metadata": {
        "id": "W55xaLDmpL__"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "# Create a flat list of all userdefined topics\n",
        "supervised_topics_flat = []\n",
        "for word in supervised_topics:\n",
        "    word = word.split(\",\")\n",
        "    supervised_topics_flat.extend(word)\n",
        "supervised_topics_flat = [x for x in supervised_topics_flat if x]"
      ],
      "metadata": {
        "id": "Q1-eZE9Kzk_1"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "supervised_topics_flat"
      ],
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "JXim_pSV6Dkz",
        "outputId": "3c0003de-980f-4fa6-87e6-4a89640b96de"
      },
      "execution_count": null,
      "outputs": [
        {
          "output_type": "execute_result",
          "data": {
            "text/plain": [
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              " 'python',\n",
              " 'renewable-energy',\n",
              " 'renewables',\n",
              " 'photovoltaic',\n",
              " 'solar-energy',\n",
              " 'renewable-energy',\n",
              " 'python',\n",
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              " 'solar',\n",
              " 'pandas',\n",
              " 'energy',\n",
              " 'irradiance',\n",
              " 'photovoltaic',\n",
              " 'pv',\n",
              " 'electricity',\n",
              " 'ninja',\n",
              " 'numpy',\n",
              " 'scipy',\n",
              " 'python',\n",
              " 'solar',\n",
              " 'photovoltaic',\n",
              " 'machine-learning',\n",
              " 'neural-network',\n",
              " 'data-processing',\n",
              " 'python',\n",
              " 'matlab',\n",
              " 'tensorflow',\n",
              " 'photovoltaic',\n",
              " 'solar-energy',\n",
              " 'solar-cells',\n",
              " 'machine-learning',\n",
              " 'computer-vision',\n",
              " 'python',\n",
              " 'photovoltaics',\n",
              " 'raytracing',\n",
              " 'optics',\n",
              " 'energy',\n",
              " 'radiance',\n",
              " 'bifacial',\n",
              " 'photovoltaics',\n",
              " 'renewable-energy',\n",
              " 'renewables',\n",
              " 'gui',\n",
              " 'photovoltaic',\n",
              " 'semiconductor',\n",
              " 'solar-cells',\n",
              " 'python',\n",
              " 'hacktoberfest',\n",
              " 'solax',\n",
              " 'solar',\n",
              " 'photovoltaic',\n",
              " 'home-automation',\n",
              " 'iot',\n",
              " 'raspberry-pi',\n",
              " 'engineering',\n",
              " 'energy',\n",
              " 'solar',\n",
              " 'thermodynamics',\n",
              " 'optimisation',\n",
              " 'simulation',\n",
              " 'modelica',\n",
              " 'modelica-library',\n",
              " 'pvoutput',\n",
              " 'python',\n",
              " 'python-library',\n",
              " 'solar',\n",
              " 'nowcasting',\n",
              " 'nowcasting',\n",
              " 'hut23',\n",
              " 'hut23-425',\n",
              " 'solar-energy',\n",
              " 'solar-cells',\n",
              " 'sun-position',\n",
              " 'beam-irradiance',\n",
              " 'photovoltaic',\n",
              " 'python',\n",
              " 'modeling',\n",
              " 'simulation',\n",
              " 'flight-simulation',\n",
              " 'freeboard',\n",
              " 'iot',\n",
              " 'solar-energy',\n",
              " 'sungrow-inverter',\n",
              " 'dashboard',\n",
              " 'pvoutput',\n",
              " 'modbus-sungrow',\n",
              " 'dweet',\n",
              " 'influxdb',\n",
              " 'telemetry',\n",
              " 'photovoltaic',\n",
              " 'python',\n",
              " 'renewable-energy',\n",
              " 'renewables',\n",
              " 'solar-energy',\n",
              " 'perovskite-solar-cells',\n",
              " 'halide-ion-migration',\n",
              " 'physics',\n",
              " 'optics',\n",
              " 'raytracing',\n",
              " 'ray-tracing',\n",
              " 'rigorous-coupled-wave',\n",
              " 'transfer-matrix-method',\n",
              " 'solar-cells',\n",
              " 'multiscale-simulation',\n",
              " 'yolo3',\n",
              " 'detector-model',\n",
              " 'model-detection',\n",
              " 'detection-boxes',\n",
              " 'fault-detection',\n",
              " 'solar-energy',\n",
              " 'photovoltaic-panels',\n",
              " 'deep-learning',\n",
              " 'keras',\n",
              " 'object-detection',\n",
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              " 'agroclimatology',\n",
              " 'weather',\n",
              " 'r',\n",
              " 'nasa-power',\n",
              " 'nasa',\n",
              " 'agroclimatology-data',\n",
              " 'weather-variables',\n",
              " 'weather-data',\n",
              " 'earth-science',\n",
              " 'rstats',\n",
              " 'data-access',\n",
              " 'r-package',\n",
              " 'defects',\n",
              " 'semiconductors',\n",
              " 'electronic-structure',\n",
              " 'materials-design',\n",
              " 'solar-cells',\n",
              " 'solar-concentrating-systems',\n",
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              " 'solar',\n",
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              " 'renewable-energy',\n",
              " 'pv-systems',\n",
              " 'deepsolar',\n",
              " 'computer-vision',\n",
              " 'inception-v3',\n",
              " 'deeplabv3',\n",
              " 'network-planning',\n",
              " 'solar-panels',\n",
              " 'climate-change',\n",
              " 'ai',\n",
              " 'deep-learning',\n",
              " 'remote-sensing',\n",
              " 'satellite-imagery',\n",
              " 'api',\n",
              " 'python',\n",
              " 'solar-energy',\n",
              " 'circular-economy',\n",
              " 'circularity-metrics',\n",
              " 'reliability',\n",
              " 'solar-energy',\n",
              " 'circularity',\n",
              " 'mass-flow',\n",
              " 'repair',\n",
              " 'reuse',\n",
              " 'recycle',\n",
              " 'photovoltaics',\n",
              " 'lifetime',\n",
              " 'nowcasting',\n",
              " 'senec',\n",
              " 'photovoltaic',\n",
              " 'photovoltaics',\n",
              " 'photovoltaics-dashboard',\n",
              " 'influxdb',\n",
              " 'wind',\n",
              " 'energy',\n",
              " 'power',\n",
              " 'model',\n",
              " 'modelling',\n",
              " 'openfoam',\n",
              " 'turbines',\n",
              " 'airfoils',\n",
              " 'blade-element',\n",
              " 'actuator-line',\n",
              " 'wind-energy',\n",
              " 'low-mach',\n",
              " 'wind-energy',\n",
              " 'les',\n",
              " 'cfd',\n",
              " 'ecp',\n",
              " 'exascale-computing',\n",
              " 'exawind',\n",
              " 'wind-turbine',\n",
              " 'wind-energy',\n",
              " 'wind-farm',\n",
              " 'aeroelasticity',\n",
              " 'wind-power',\n",
              " 'wind',\n",
              " 'ecp',\n",
              " 'exascale-computing',\n",
              " 'amrex',\n",
              " 'amr',\n",
              " 'wind',\n",
              " 'wind-turbines',\n",
              " 'openmdao',\n",
              " 'systems-engineering',\n",
              " 'wisdem',\n",
              " 'wind',\n",
              " 'simulation',\n",
              " 'wind-energy',\n",
              " 'python3',\n",
              " 'simpy',\n",
              " 'operations-maintenance',\n",
              " 'nasa',\n",
              " 'open-source',\n",
              " 'framework',\n",
              " 'openmdao',\n",
              " 'optimization',\n",
              " 'wind-turbine',\n",
              " 'wind-energy',\n",
              " 'fault-detection',\n",
              " 'machine-learning',\n",
              " 'scada',\n",
              " 'classification',\n",
              " 'machine-learning',\n",
              " 'time-series',\n",
              " 'energy',\n",
              " 'renewable-energy',\n",
              " 'python',\n",
              " 'jupyter-notebook',\n",
              " 'wind-turbines',\n",
              " 'dnvgl-os-c101',\n",
              " 'design-of-offshore-steel-structures',\n",
              " 'buckling',\n",
              " 'fatigue-analysis',\n",
              " 'analysis-framework',\n",
              " 'plate-thickness',\n",
              " 'beam-section',\n",
              " 'gui-based',\n",
              " 'dnvgl-rp-c201',\n",
              " 'optimization-tools',\n",
              " 'structural-engineering',\n",
              " 'naval-architecture',\n",
              " 'dnvgl-rp-c203',\n",
              " 'cylinders',\n",
              " 'plates',\n",
              " 'girder',\n",
              " 'dnv-os-c101',\n",
              " 'python',\n",
              " 'matplotlib',\n",
              " 'windrose',\n",
              " 'wind',\n",
              " 'speed',\n",
              " 'pandas',\n",
              " 'numpy',\n",
              " 'aeroelasticity',\n",
              " 'simulation',\n",
              " 'aeronautics',\n",
              " 'structures',\n",
              " 'structural-dynamics',\n",
              " 'wind-turbines',\n",
              " 'wave-structure-interaction',\n",
              " 'boundary-element-method',\n",
              " 'potential-flow-theory',\n",
              " 'offshore-wind-platforms',\n",
              " 'ocean-wave-energy-converters',\n",
              " 'rotor',\n",
              " 'propeller',\n",
              " 'wind-turbine',\n",
              " 'bem',\n",
              " 'bemt',\n",
              " 'aerodynamics',\n",
              " 'aircraft',\n",
              " 'rotorcraft',\n",
              " 'aerodynamics',\n",
              " 'aircraft',\n",
              " 'cfd',\n",
              " 'vpm',\n",
              " 'vortex-methods',\n",
              " 'acoustics',\n",
              " 'aeroacoustics',\n",
              " 'computational-fluid-dynamics',\n",
              " 'rotorcraft',\n",
              " 'vtol',\n",
              " 'wind-turbine',\n",
              " 'snl-applications',\n",
              " 'hydropower',\n",
              " 'energy-system',\n",
              " 'power-system-simulation',\n",
              " 'mhkit-python',\n",
              " 'mhkit',\n",
              " 'marine-renewable-energy',\n",
              " 'quality-control',\n",
              " 'visualization',\n",
              " 'python',\n",
              " 'hydropower',\n",
              " 'modelica-library',\n",
              " 'open-source',\n",
              " 'wec-sim',\n",
              " 'marine-renewable-energy',\n",
              " 'wave-energy',\n",
              " 'matlab',\n",
              " 'simulink',\n",
              " 'snl-applications',\n",
              " 'hydrodynamics',\n",
              " 'hydrodynamics',\n",
              " 'meshviewer',\n",
              " 'mesh-processing',\n",
              " 'potential-flow',\n",
              " 'offshore-wind-platforms',\n",
              " 'hydrodynamic-coefficients-viewer',\n",
              " 'boundary-element',\n",
              " 'wave-energy',\n",
              " 'python',\n",
              " 'fortran',\n",
              " 'hydrodynamics',\n",
              " 'potential-flow',\n",
              " 'boundary-element-method',\n",
              " 'water-wave',\n",
              " 'wave-energy',\n",
              " 'reservoir',\n",
              " 'simulation',\n",
              " 'water-resources',\n",
              " 'hydrology',\n",
              " 'geothermal-energy',\n",
              " 'borefields',\n",
              " 'sizing',\n",
              " 'energy',\n",
              " 'storage',\n",
              " 'geothermal',\n",
              " 'simulation',\n",
              " 'energy',\n",
              " 'physics',\n",
              " 'heat-transfer',\n",
              " 'engineering',\n",
              " 'science',\n",
              " 'porous-flow',\n",
              " 'simulation-modeling',\n",
              " 'reactive-chemistry',\n",
              " 'coupled-heat-mass',\n",
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              " 'groundwater-modelling',\n",
              " 'carbon-storage',\n",
              " 'soil-vapor',\n",
              " 'earth-science',\n",
              " 'carbon-sequestration',\n",
              " 'subsurface-remediation',\n",
              " 'nuclear-waste-repositories',\n",
              " 'subsurface-hydrology',\n",
              " 'geothermal-energy',\n",
              " 'thermodynamics',\n",
              " 'chemistry',\n",
              " 'cheminformatics',\n",
              " 'chemical-engineering',\n",
              " 'mechanical-engineering',\n",
              " 'viscosity',\n",
              " 'density',\n",
              " 'heat-capacity',\n",
              " 'thermal-conductivity',\n",
              " 'surface-tension',\n",
              " 'combustion',\n",
              " 'environmental-engineering',\n",
              " 'solubility',\n",
              " 'vapor-pressure',\n",
              " 'equation-of-state',\n",
              " 'molecule',\n",
              " 'process-simulation',\n",
              " 'physics',\n",
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              " 'reservoir-simulation',\n",
              " 'reservoir-modeling',\n",
              " 'parallel',\n",
              " 'petsc',\n",
              " 'geology',\n",
              " 'structural-geology',\n",
              " 'fracture-mechanics',\n",
              " 'fracture',\n",
              " 'fractures',\n",
              " 'geomechanics',\n",
              " 'borehole-image-analysis',\n",
              " 'python',\n",
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              " 'geothermal',\n",
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              " 'moose-framework',\n",
              " 'distillation',\n",
              " 'flash',\n",
              " 'biorefinery',\n",
              " 'bioprocess',\n",
              " 'fermentation',\n",
              " 'thermodynamics',\n",
              " 'pump',\n",
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              " 'heat-exchanger',\n",
              " 'techno-economic-analysis',\n",
              " 'chemical-engineering',\n",
              " 'biochemical-process',\n",
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              " 'database',\n",
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              " 'plants',\n",
              " 'phenotyping',\n",
              " 'crops',\n",
              " 'ecosystem-models',\n",
              " 'energy',\n",
              " 'simulation',\n",
              " 'battery',\n",
              " 'impedance',\n",
              " 'lithium-ion',\n",
              " 'battery',\n",
              " 'electrochemistry',\n",
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              " 'corrosion',\n",
              " 'pybamm',\n",
              " 'battery-models',\n",
              " 'solvers',\n",
              " 'python',\n",
              " 'batteries',\n",
              " 'simulation',\n",
              " 'bms',\n",
              " 'batteries',\n",
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              " 'battery-management-system',\n",
              " 'chemistry',\n",
              " 'electrochemistry',\n",
              " 'physics',\n",
              " 'data-analysis',\n",
              " 'opensource',\n",
              " 'battery',\n",
              " 'energy-storage',\n",
              " 'pyomo',\n",
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              " 'optimization',\n",
              " 'python',\n",
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              " 'equivalent-circuit-model',\n",
              " 'battery-cell',\n",
              " 'battery',\n",
              " 'cell',\n",
              " 'bms',\n",
              " 'lithium',\n",
              " 'wireless',\n",
              " 'welding',\n",
              " 'cc1310',\n",
              " 'powerwall',\n",
              " 'ev',\n",
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              " 'dkblock',\n",
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              " 'chemistry',\n",
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              " 'script',\n",
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              " 'static-analyzer',\n",
              " 'simulator',\n",
              " 'physics',\n",
              " 'physics-simulation',\n",
              " 'opem',\n",
              " 'python',\n",
              " 'matplotlib',\n",
              " 'pyqt5',\n",
              " 'qt5',\n",
              " 'simulation',\n",
              " 'chemistry',\n",
              " 'fuel-cell',\n",
              " 'physics',\n",
              " 'electrochemistry',\n",
              " 'physics-simulation',\n",
              " 'pem',\n",
              " 'fuel-cell',\n",
              " 'dataset',\n",
              " 'polarization',\n",
              " 'proton-exchange-membrane',\n",
              " 'mea',\n",
              " 'data',\n",
              " 'data-science',\n",
              " 'chemistry',\n",
              " 'electrochemistry',\n",
              " 'energy',\n",
              " 'power',\n",
              " 'science',\n",
              " 'science-research',\n",
              " 'physics',\n",
              " 'activation-procedure',\n",
              " 'open-source',\n",
              " 'open-science',\n",
              " 'nafion',\n",
              " 'impedance',\n",
              " 'snl-applications',\n",
              " 'gas-network-formulations',\n",
              " 'optimization',\n",
              " 'gas-flow',\n",
              " 'network',\n",
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              " 'power-systems',\n",
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              " 'rnn',\n",
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              " 'arima',\n",
              " 'wma',\n",
              " 'ses',\n",
              " 'sma',\n",
              " 'electric-load-forecasting',\n",
              " 'time-series-forecasting',\n",
              " 'nrel',\n",
              " 'renewable-energy',\n",
              " 'optimization',\n",
              " 'reopt-lite-api',\n",
              " 'python',\n",
              " 'pyomo',\n",
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              " 'optimisation-model',\n",
              " 'mathematical-modelling',\n",
              " 'linear-programming',\n",
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              " 'python',\n",
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              " 'python',\n",
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              " 'energy-model',\n",
              " 'energy',\n",
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              " 'standalone-software',\n",
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              " 'hydro',\n",
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              " 'energy',\n",
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              " 'analysis',\n",
              " 'simulations',\n",
              " 'julia',\n",
              " 'powersystems',\n",
              " 'energy-system',\n",
              " 'electrical',\n",
              " 'nrel',\n",
              " 'energy-system-model',\n",
              " 'gams',\n",
              " 'optimisation-model',\n",
              " 'ontology',\n",
              " 'energy',\n",
              " 'open-energy-family',\n",
              " 'adequacy',\n",
              " 'simulation',\n",
              " 'power-systems',\n",
              " 'simulation',\n",
              " 'co-simulation',\n",
              " 'power-grids',\n",
              " 'simulation-framework',\n",
              " 'energy',\n",
              " 'energy-system',\n",
              " 'modelling',\n",
              " 'modelling-framework',\n",
              " 'process-systems-engineering',\n",
              " 'process-modeling',\n",
              " 'chemical-engineering',\n",
              " 'simulation',\n",
              " 'datamodel',\n",
              " 'powersystem',\n",
              " 'pypsa',\n",
              " 'energy',\n",
              " 'energy-system',\n",
              " 'energy-model',\n",
              " 'energy-system-model',\n",
              " 'r',\n",
              " 'monte-carlo-simulation',\n",
              " 'simulation',\n",
              " 'optimization',\n",
              " 'linear-programming',\n",
              " 'stochastic-simulation-algorithm',\n",
              " 'energy',\n",
              " 'electric',\n",
              " 'renewable-energy',\n",
              " 'adequacy',\n",
              " 'shiny',\n",
              " 'shiny-apps',\n",
              " 'manipulatewidge',\n",
              " 'dygraphs',\n",
              " 'plotly',\n",
              " 'leaflet',\n",
              " 'rte',\n",
              " 'bilan',\n",
              " 'previsionnel',\n",
              " 'tyndp',\n",
              " 'r',\n",
              " 'monte-carlo-simulation',\n",
              " 'optimisation',\n",
              " 'simulation',\n",
              " 'linear-algebra',\n",
              " 'energy',\n",
              " 'electricity',\n",
              " 'adequacy',\n",
              " 'rhdf5',\n",
              " 'hdf5',\n",
              " 'rte',\n",
              " 'tyndp',\n",
              " 'bilan',\n",
              " 'previsionnel',\n",
              " 'spine-toolbox',\n",
              " 'python',\n",
              " 'energy',\n",
              " 'anaconda',\n",
              " 'miniconda',\n",
              " 'simulation-model',\n",
              " 'workflow',\n",
              " 'data',\n",
              " 'python',\n",
              " 'optimization',\n",
              " 'energy',\n",
              " 'capacity-expansion-planning',\n",
              " 'energy',\n",
              " 'julia',\n",
              " 'linear-programming',\n",
              " 'optimization',\n",
              " 'capacity-expansion-planning',\n",
              " 'energy',\n",
              " 'energy-optimization-model',\n",
              " 'julia',\n",
              " 'jump',\n",
              " 'clustering',\n",
              " 'california',\n",
              " 'germany',\n",
              " 'simulation',\n",
              " 'real-time',\n",
              " 'dynamic-phasors',\n",
              " 'powerflow',\n",
              " 'electromagnetic-transient',\n",
              " 'power-systems',\n",
              " 'emt',\n",
              " 'quasi-stationary',\n",
              " 'oep',\n",
              " 'django',\n",
              " 'rest-api',\n",
              " 'energy',\n",
              " 'database',\n",
              " 'open-energy-family',\n",
              " 'open-data',\n",
              " 'python',\n",
              " 'loadflow',\n",
              " 'optimisation',\n",
              " 'pyomo',\n",
              " 'energy-system',\n",
              " 'power-systems-analysis',\n",
              " 'optimal-power-flow',\n",
              " 'powerflow',\n",
              " 'energy',\n",
              " 'energy-systems',\n",
              " 'pypsa',\n",
              " 'power-flow',\n",
              " 'power-systems',\n",
              " 'renewable-energy',\n",
              " 'electrical-engineering',\n",
              " 'capacity-expansion-planning',\n",
              " 'clean-energy',\n",
              " 'climate-change',\n",
              " 'renewables',\n",
              " 'renewable-energy',\n",
              " 'renewable-timeseries',\n",
              " 'potentials',\n",
              " 'wind',\n",
              " 'pv',\n",
              " 'csp',\n",
              " 'gis',\n",
              " 'high-resolution',\n",
              " 'powsybl',\n",
              " 'power-systems',\n",
              " 'power-system-simulation',\n",
              " 'energy-system',\n",
              " 'modular',\n",
              " 'extensible',\n",
              " 'cim',\n",
              " 'java',\n",
              " 'groovy',\n",
              " 'powsybl',\n",
              " 'klu',\n",
              " 'power-systems',\n",
              " 'power-system-simulation',\n",
              " 'energy-system',\n",
              " 'java',\n",
              " 'load-flow',\n",
              " 'power-flow',\n",
              " 'loadflow',\n",
              " 'powerflow',\n",
              " 'matpower',\n",
              " 'matpower-github',\n",
              " 'energy-models',\n",
              " 'gams',\n",
              " 'glpk',\n",
              " 'pyomo',\n",
              " 'julia',\n",
              " 'oemof',\n",
              " 'power-system-analysis',\n",
              " 'unit-commitment',\n",
              " 'economic-dispatch',\n",
              " 'transmission',\n",
              " 'dc-flow',\n",
              " 'n-1-criterion',\n",
              " 'water-energy-nexus',\n",
              " 'python',\n",
              " 'dispatchable-units',\n",
              " 'renewable-resources',\n",
              " 'electricity-supply',\n",
              " 'substations',\n",
              " 'hacktoberfest',\n",
              " 'modelica',\n",
              " 'power-grid',\n",
              " 'power-grids',\n",
              " 'power-system-simulation',\n",
              " 'power-systems',\n",
              " 'power-systems-analysis',\n",
              " 'gridcal',\n",
              " 'power-system-dynamic-modeling',\n",
              " 'power-system-dynamics',\n",
              " 'power-system-stability',\n",
              " 'power-system-stabilizer',\n",
              " 'smart-grids',\n",
              " 'energy',\n",
              " 'energy-system',\n",
              " 'energy-system-modeling',\n",
              " 'reinforcement-learning',\n",
              " 'energy',\n",
              " 'geospatial',\n",
              " 'geospatial-analysis',\n",
              " 'renewable-energy',\n",
              " 'energy',\n",
              " 'python',\n",
              " 'clustering',\n",
              " 'timeseries',\n",
              " 'energy-system',\n",
              " 'typical-periods',\n",
              " 'optimization',\n",
              " 'aggregation',\n",
              " 'python',\n",
              " 'time-series',\n",
              " 'clustering',\n",
              " 'optimization',\n",
              " 'energy-systems',\n",
              " 'k-means-clustering',\n",
              " 'k-medoids-clustering',\n",
              " 'hierarchical-clustering',\n",
              " 'representative-days',\n",
              " 'time-series-aggregation',\n",
              " 'julia',\n",
              " 'energy',\n",
              " 'electricity',\n",
              " 'power',\n",
              " 'renewables',\n",
              " 'renewable-energy',\n",
              " 'planning',\n",
              " 'power-systems',\n",
              " 'power-system-simulation',\n",
              " 'power-system-analysis',\n",
              " 'optimization',\n",
              " 'time-series',\n",
              " 'renewable-energy',\n",
              " 'machine-learning',\n",
              " 'streamlit',\n",
              " 'time-series-forecasting',\n",
              " 'pycaret',\n",
              " 'esdl',\n",
              " 'energy',\n",
              " 'energy-transition',\n",
              " 'energy-transition-calculation',\n",
              " 'dsl',\n",
              " 'description-language',\n",
              " 'language',\n",
              " 'energy-information',\n",
              " 'interoperability',\n",
              " 'energy-system-model',\n",
              " 'times-model',\n",
              " 'gams',\n",
              " 'scenario-analysis',\n",
              " 'ireland',\n",
              " 'energy-planning',\n",
              " 'psp-ufu',\n",
              " 'power-system-simulation',\n",
              " 'power-flow',\n",
              " 'short-circuit',\n",
              " 'stability',\n",
              " 'harmonics',\n",
              " 'educational-software',\n",
              " 'research',\n",
              " 'industry-aplication',\n",
              " 'graphical-user-interface',\n",
              " 'computer-aided-design',\n",
              " 'synchronous-machine',\n",
              " 'user-defined-control',\n",
              " 'induction-motors',\n",
              " 'free-and-open-source-software',\n",
              " 'open-source-project',\n",
              " 'free-libre-open-source-software',\n",
              " 'forecasting',\n",
              " 'energy',\n",
              " 'python',\n",
              " 'data-science',\n",
              " 'machine-learning',\n",
              " 'time-series',\n",
              " 'energy',\n",
              " 'costs',\n",
              " 'energy-system-model',\n",
              " 'decarbonization',\n",
              " 'decision-support',\n",
              " 'demand-response',\n",
              " 'flexibility-modeling',\n",
              " 'optimization',\n",
              " 'energy-system-modeling',\n",
              " 'pypsa-africa',\n",
              " 'pypsa-earth',\n",
              " 'energy-system-model',\n",
              " 'python',\n",
              " 'investment-optimization',\n",
              " 'operational-optimization',\n",
              " 'power-system-model',\n",
              " 'scenario-analysis',\n",
              " 'energy-system-planning',\n",
              " 'power-system-planning',\n",
              " 'renewable-energy',\n",
              " 'reservoir-modeling',\n",
              " 'climatechange',\n",
              " 'energy-management',\n",
              " 'photovoltaics',\n",
              " 'energy-storage',\n",
              " 'electric-vehicle-charging-station',\n",
              " 'heatpump',\n",
              " 'energy',\n",
              " 'efficiency',\n",
              " 'energy-data',\n",
              " 'energy-efficiency',\n",
              " 'building-energy',\n",
              " 'energy',\n",
              " 'platform',\n",
              " 'collaboration',\n",
              " 'linux-foundation',\n",
              " 'hypervision',\n",
              " 'alerting',\n",
              " 'energy',\n",
              " 'bath',\n",
              " 'school',\n",
              " 'rails',\n",
              " 'ruby',\n",
              " 'ruby-on-rails',\n",
              " 'data',\n",
              " 'emonpi',\n",
              " 'hardware-designs',\n",
              " 'raspberry-pi',\n",
              " 'energy-monitor',\n",
              " 'arduino',\n",
              " 'emoncms',\n",
              " 'emoncms',\n",
              " 'php',\n",
              " 'openenergymonitor',\n",
              " 'energy-monitor',\n",
              " 'dashboards',\n",
              " 'sustainability',\n",
              " 'energy',\n",
              " 'energy-data',\n",
              " 'energy-flexibility',\n",
              " 'backend',\n",
              " 'machine-learning',\n",
              " 'snl-applications',\n",
              " 'snl-science-libs',\n",
              " 'optimization',\n",
              " 'python',\n",
              " 'power',\n",
              " 'milp',\n",
              " 'nlp',\n",
              " 'minlp',\n",
              " 'energy-system',\n",
              " 'powerflow',\n",
              " 'snakemake',\n",
              " 'energy',\n",
              " 'energy-system',\n",
              " 'power-systems',\n",
              " 'energy-model',\n",
              " 'pypsa',\n",
              " 'energy-system-model',\n",
              " 'energy-systems',\n",
              " 'iot-platform',\n",
              " 'smartmetering',\n",
              " 'public-lighting',\n",
              " 'distribution-automation',\n",
              " 'dlms',\n",
              " 'iec61850',\n",
              " 'oslp',\n",
              " 'cucumber-tests',\n",
              " 'java',\n",
              " 'springframework',\n",
              " 'optimization',\n",
              " 'network',\n",
              " 'power-network',\n",
              " 'optimal-power-flow',\n",
              " 'optimization',\n",
              " 'network',\n",
              " 'power-network',\n",
              " 'optimal-power-flow',\n",
              " 'optimal-power-flow',\n",
              " 'matpower',\n",
              " 'benchmark',\n",
              " 'dataset',\n",
              " 'power-network',\n",
              " 'reinforcement-learning',\n",
              " 'simulator',\n",
              " 'powergrid',\n",
              " 'reinforcement-learning-environments',\n",
              " 'gym-environments',\n",
              " 'grid2op',\n",
              " 'reinforcement-learning',\n",
              " 'reinforcement-learning-environments',\n",
              " 'powergrid',\n",
              " 'powergrid-operation',\n",
              " 'gym-environments',\n",
              " 'oemof',\n",
              " 'rts',\n",
              " 'energy-system',\n",
              " 'energy-data',\n",
              " 'power-systems',\n",
              " 'power-systems-analysis',\n",
              " 'matpower',\n",
              " 'reinforcement-learning',\n",
              " 'openai-gym',\n",
              " 'openai-gym-environments',\n",
              " 'machine-learning',\n",
              " 'control',\n",
              " 'simulation',\n",
              " 'modelica',\n",
              " 'openmodelica',\n",
              " 'power-electronics',\n",
              " 'power-systems',\n",
              " 'microgrid',\n",
              " 'energy-system-modeling',\n",
              " 'power-supply',\n",
              " 'smart-grids',\n",
              " 'engineering',\n",
              " 'electrical-engineering',\n",
              " 'python',\n",
              " 'julia',\n",
              " 'nrel',\n",
              " 'python',\n",
              " 'powerflow',\n",
              " 'electrical-engineering',\n",
              " 'electrical',\n",
              " 'helm',\n",
              " 'newton-raphson',\n",
              " 'latin-hypercube',\n",
              " 'monte-carlo-simulation',\n",
              " 'cim',\n",
              " 'comon-information-model',\n",
              " 'stochastic-power-flow',\n",
              " 'multi-terminal',\n",
              " 'acdc',\n",
              " 'optimization',\n",
              " 'power-systems',\n",
              " ...]"
            ]
          },
          "metadata": {},
          "execution_count": 5
        }
      ]
    },
    {
      "cell_type": "code",
      "source": [
        "# Define a list of blacklist topics and remove them from the topic list\n",
        "topic_black_list = [\"install\",\"data\",\"python\",\"using\",\"use\"]\n",
        "topic_black_list_set = set(topic_black_list)\n",
        "supervised_topics_flat_cleaned = [x for x in supervised_topics_flat if x not in topic_black_list_set]"
      ],
      "metadata": {
        "id": "KSejke8SFBJa"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "from keybert import KeyBERT\n",
        "from sklearn.feature_extraction.text import CountVectorizer\n",
        "\n",
        "\n",
        "# Extract keywords\n",
        "kw_model = KeyBERT()\n",
        "keywords = kw_model.extract_keywords(docs)\n",
        "\n",
        "vocabulary = [k[0] for keyword in keywords for k in keyword]\n",
        "vocabulary = list(set(vocabulary))\n",
        "vocabulary = [str(i) for i in vocabulary]\n",
        "\n",
        "vectorizer_model= CountVectorizer(vocabulary=vocabulary,stop_words=\"english\")\n"
      ],
      "metadata": {
        "id": "8isrzIxzaIND"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "from bertopic import BERTopic\n",
        "from bertopic.vectorizers import ClassTfidfTransformer\n",
        "\n",
        "ctfidf_model = ClassTfidfTransformer(bm25_weighting=True)\n",
        "\n",
        "topic_model = BERTopic(ctfidf_model=ctfidf_model, min_topic_size=10)\n",
        "topics, probs = topic_model.fit_transform(docs)"
      ],
      "metadata": {
        "id": "pmATl1bFqGoi"
      },
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "topic_model.get_topic_info()"
      ],
      "metadata": {
        "id": "YBDPvrezqLyo",
        "colab": {
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          "height": 143
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              "      background-color: #E2EBFA;\n",
              "      box-shadow: 0px 1px 2px rgba(60, 64, 67, 0.3), 0px 1px 3px 1px rgba(60, 64, 67, 0.15);\n",
              "      fill: #174EA6;\n",
              "    }\n",
              "\n",
              "    [theme=dark] .colab-df-convert {\n",
              "      background-color: #3B4455;\n",
              "      fill: #D2E3FC;\n",
              "    }\n",
              "\n",
              "    [theme=dark] .colab-df-convert:hover {\n",
              "      background-color: #434B5C;\n",
              "      box-shadow: 0px 1px 3px 1px rgba(0, 0, 0, 0.15);\n",
              "      filter: drop-shadow(0px 1px 2px rgba(0, 0, 0, 0.3));\n",
              "      fill: #FFFFFF;\n",
              "    }\n",
              "  </style>\n",
              "\n",
              "      <script>\n",
              "        const buttonEl =\n",
              "          document.querySelector('#df-edd3fbc2-306a-4d8a-ba7c-a1de641226a4 button.colab-df-convert');\n",
              "        buttonEl.style.display =\n",
              "          google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
              "\n",
              "        async function convertToInteractive(key) {\n",
              "          const element = document.querySelector('#df-edd3fbc2-306a-4d8a-ba7c-a1de641226a4');\n",
              "          const dataTable =\n",
              "            await google.colab.kernel.invokeFunction('convertToInteractive',\n",
              "                                                     [key], {});\n",
              "          if (!dataTable) return;\n",
              "\n",
              "          const docLinkHtml = 'Like what you see? Visit the ' +\n",
              "            '<a target=\"_blank\" href=https://colab.research.google.com/notebooks/data_table.ipynb>data table notebook</a>'\n",
              "            + ' to learn more about interactive tables.';\n",
              "          element.innerHTML = '';\n",
              "          dataTable['output_type'] = 'display_data';\n",
              "          await google.colab.output.renderOutput(dataTable, element);\n",
              "          const docLink = document.createElement('div');\n",
              "          docLink.innerHTML = docLinkHtml;\n",
              "          element.appendChild(docLink);\n",
              "        }\n",
              "      </script>\n",
              "    </div>\n",
              "  </div>\n",
              "  "
            ]
          },
          "metadata": {},
          "execution_count": 11
        }
      ]
    }
  ]
}