comply with ruff format #15

	name: CI/CD Pipeline

	on:
	push:
	branches:
	- main
	- "ci-*"
	pull_request:
	branches:
	- main

	jobs:
	check_code_quality:
	name: Check Code Quality
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Set up Python 3.8
	uses: actions/setup-python@v5
	with:
	python-version: "3.8"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install .[quality]
	- name: Run Ruff code quality checks
	run: \|
	ruff check tests src setup.py --output-format=github
	ruff format --check tests src setup.py

	tests:
	needs: check_code_quality
	strategy:
	matrix:
	test: [unit]
	os: [ubuntu-latest, windows-latest]
	python-version: ["3.8", "3.9", "3.10", "3.11"]
	runs-on: ${{ matrix.os }}
	continue-on-error: ${{ matrix.test == 'integration' }}
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install uv --upgrade
	uv pip install --system "biosets[test] @ ."


	- name: Run Tests
	run: \|
	mkdir -p reports/${{ matrix.test }}_tests
	python3 -m pytest -m ${{ matrix.test }} -n 2 --dist loadfile -sv ./tests/ --junitxml=reports/${{ matrix.test }}_tests/results.xml

	- name: Upload Unit Test Results
	uses: actions/upload-artifact@v3
	with:
	name: ${{ matrix.test }}-test-reports
	path: reports/${{ matrix.test }}_tests/results.xml

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