forked from christophersanborn/Radiative3D
-
Notifications
You must be signed in to change notification settings - Fork 0
/
do-halfspace-nearsrc25.sh
executable file
·383 lines (350 loc) · 15.4 KB
/
do-halfspace-nearsrc25.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
#!/bin/bash
##
## "DO"-script for a Radiative3D run:
##
## Copy and edit this file to easily specify (and remember)
## parameters used for a particular run.
##
## If $1 is set, it is used as an extra identifier token in the
## output directory name.
##
## (Note: Do not edit line 3. It is used by subsequent scripts to
## identify this file as a "do script". (See wikify.sh.))
##
source scripts/do-fundamentals.sh
##
## This DO-SCRIPT sets up a run based on a HALFSPACE model with up to
## ONE interface layer.
##
## One-liner description: (Keep this BRIEF.)
##
INTENT="Looking at range no further than 5x source depth."
CAMPAIGN="" ## (e.g. "For AGU Poster Dec 2016" or some such.)
SIMTARGET="waveform" # Choice: 'waveform' or 'video'. Affects
# defaults not otherwise specified.
MODIDX=40 # HALFSPACE # Model Index: Selects from custom coded models.
# 1: Lop Nor (base or moho depends on COMPARGS),
# 5: North Sea Crust Pinch model,
# 8: Crust Upthrust model
# 40: Halfspace model
event=eq # 'eq' or 'expl' - See case statement below for choices
EQISOFRAC=0.0 # Iso fraction for EQ event (choose from range [-1.0, 1.0])
##
## Epicenter and Station Locations
##
EPIXYZ=0,0,0 #
STAXYZ=17.678,17.678,0 # Station 'A', 25 km to the NE; Pg azimuth
STBXYZ=25,0,0 # Station 'B', 25 km to the East; Lg azimuth
STCXYZ=23.097,-9.5673,0 # Station 'C', 25 km to the ESE; mixed Pg/Lg
FREQ=2.0 # Phonon frequency to model
NUMPHONS=10M # Number of phonons to spray (Recommend: 140M)
RECTIME=125 # Recording duration of seismometers (seconds).
BINSIZE=0.10 # Seismometer time-bin size in seconds
GATHER=0.0105,1.0 # Terminal gather radius, in kilometers.
R0=0.2632 # Range of first receiver in array
NSEIS=48 # Number of receivers per linear array
CYLRAD=700 # Total (cylindrical) radius of model.
# (Phonons exceeding this radius from XY
# = (0,0), or this travel time from t=0,
# are abandoned.)
SCAT1=0.8,0.01,1.0,0.5,1000 # Scat Args (nu,eps,a,kappa) and Q in top layer
SCAT2=0.8,0.01,1.0,0.5,1000 # Scat Args (nu,eps,a,kappa) and Q in bot layer
VPVS1=6.40,3.63,2.83,-60 # Seismic attrs (Vp, Vs, rho, z-bottom) top layer
VPVS2=6.40,3.63,2.83,-400 # Seismic attrs (Vp, Vs, rho, z-bottom) bot layer
# (Note: Q's specified are Q_s values.
# Q_p is computed from assumption that
# Q_kappa is infinite.)
COMPARGS=$SCAT1,$SCAT2,$VPVS1,$VPVS2
#FLATTEN="--flatten" # If set to "--flatten", apply Earth-flattening
FLATTEN="" # transformation to depths and velocities.
# (Set to "" to disable.)
ADDITIONAL="" # Additional params. (Such as --ocsraw,
# or --earthrad=xxxx) Radii: Earth: 6371 km,
# Mars: 3389, Mercury: 2440, Earth's
# moon: 1737
#
# Event Parameters:
#
case "$event" in
expl) # Generic explosion
SOURCELOC=0,0,-5 # Origin, 5km deep
SOURCETYP=EXPL #
;;
eq) # Generic earthquake
SOURCELOC=0,0,-5 # Origin, 5km deep
SOURCETYP=SDR,0,90,0,$EQISOFRAC # Basic Strike-Slip
;;
*)
echo Event code not recognized.
exit
;;
esac
SEISORIG1=$EPIXYZ # Array locations:
SEISORIG2=$EPIXYZ #
SEISORIG3=$EPIXYZ #
SEISDEST1=$STAXYZ #
SEISDEST2=$STBXYZ #
SEISDEST3=$STCXYZ #
SEIS1=--seis-p2p=$SEISORIG1,$SEISDEST1,$R0,$GATHER,$NSEIS
SEIS2=--seis-p2p=$SEISORIG2,$SEISDEST2,$R0,$GATHER,$NSEIS
SEIS3=--seis-p2p=$SEISORIG3,$SEISDEST3,$R0,$GATHER,$NSEIS
## RUN THE SIMULATION:
##
## Set up output directory and run the sim:
##
PopDefaults $SIMTARGET ## Defined in do-fundamentals.sh
CheckBuildStatus ## ''
CreateOutputDirectory $@ ## ''
RunSimulation ## ''
echo Begin Figure Generation: >> "$LOGFILE"
rwd=`pwd` # Switch to output directory - the rest of our work
cd "$outdir" # will be done there.
## (Do not edit/remove this comment block.)
#!/bin/bash
## ___FIG_GEN_START___
##
## # Note: this part of the do-script will
## GENERATE FIGURES AND GRAPHICS: # be carved off into 'do-figsonly.sh'
## # to facilitate re-running and/or
# customizing figure output after the
# initial run.
# Organize seisfiles
mkdir -p seisfiles # Stash seis files in a subdirectory (aesthetics)
mv seis_???.octv seisfiles/ 2> /dev/null || : # (suppress error msg and code)
# Text values for Wiki script:
cat > wikify.incl <<EOF
STA="PGX"
STB="LGX"
STC="PLG"
MODELCODE="HLF"
EOF
# Determine RunID from name of do-script: (for labeling figs)
SHFILE=RUNID
for file in *.sh; do
if grep -qx '## "DO"-script for a Radiative3D run:' "$file"
then # Catch ONLY file with R3D do marker
SHFILE="$file" # Also catches no more than one do- file
fi #
done
RUNID=${SHFILE%.sh}
RUNID=${RUNID#do-}
echo "Found RunID: $RUNID"
# Some octave/gnuplot set-up and platform-independence stuff:
alias octave="octave --no-window-system" # Prevents trouble on some systems.
export GNUTERM="dumb" # Ascii, but we don't disply so is OK.
shopt -s expand_aliases # Aliases in scripts... needs enabled.
reverser="tac" # Linux has tac (backwords cat)
[ "`uname`" == "Darwin" ] && reverser="tail -r" # But OS X has 'tail -r',...
revtail() { $reverser | tail $@ | $reverser; } # 'head' with neg line count
# does not work on OS X, so
# use revtail in its place.
if [ -x "`which pdfcrop 2> /dev/null`" ]; then # Check whether pdfcrop is
pdfcroptobb() { # $1=tmp-file $2=ouputfile # installed. If yes, then
pdfcrop --margins 0 "$1" "$2" >/dev/null # define pdfcroptobb (PDF-Crop-
rm "$1" # to-Bounding-Box), otherwise
} else # define a dummy function.
pdfcroptobb() { #
echo "pdfcrop not installed.";
mv "$1" "$2"; }
fi
# Make seismometer and model maps:
echo "Plotting model maps and cross-sections."
cat stdout.txt | \
grep -A 10000 "# R3D_GRID:" | \
grep -B 10000 "# END R3D_GRID" | \
revtail -n +2 | \
tail -n +9 | \
sed 's/\*\*\*/000/g' > griddump.txt
octave -qf <<"EOF"
## Seismometer Map:
seismap("seisfiles/seis_???.octv","out_mparams.octv",
[-10.8 54 -10 38.6], [45 95 118], {"PGX","LGX","PLG"});
legend("hide"); # (We're not using separate P and S gather anymore)
print("seismap.png","-r200"); # PNG version for wiki
print("tmp-seismap.pdf"); # PDF version for publication
## LOP to MAK:
modelplot("griddump.txt", [1 2], {"SRC","PGX"},
"out_mparams.octv",
"seisfiles/seis_%03d.octv",
[0,1:2:47]);
print("profile-LOP-MAK.png","-r200"); # PNG version for wiki
#delete(findall("tag","sourcemark")); # Remove source marker for publication
#delete(findall("tag","seismometer"));# Remove seismometer marks if desired
print("tmp-profile-LOP-MAK.pdf"); # PDF version for publication
## LOP to WUS:
modelplot("griddump.txt", [1 3], {"SRC","LGX"},
"out_mparams.octv",
"seisfiles/seis_%03d.octv",
[48,49:2:95]);
print("profile-LOP-WUS.png","-r200");
## WUS to MAK:
modelplot("griddump.txt", [3 2], {"LGX","PGX"},
"out_mparams.octv",
"",
[]);
print("profile-WUS-MAK.png","-r200");
EOF
pdfcroptobb "tmp-seismap.pdf" "seismap.pdf" # Crop to bb
pdfcroptobb "tmp-profile-LOP-MAK.pdf" "profile-LOP-MAK.pdf"
# Seismograms:
if [ "$1" != "noseis" ]; then
echo "Plotting envelopes..."
for file in seisfiles/{seis_{000,048,096},seis_?[02479][357]}.octv ; do
ofile=`basename "${file%.octv}.png"` # PNG's for wiki
echo $ofile
octave -qf << EOF
seisplot("$file");
papertext(0.01, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal", "color", [0 0 0]);
print("$ofile","-r200");
EOF
done
fi
for file in seisfiles/{seis_047.octv,seis_095.octv,seis_143.octv} ; do
ofile=`basename "${file%.octv}.pdf"` # PDF for publication
echo $ofile
octave -qf << EOF
seisplot("$file");
hRID = papertext(0.01, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal", "color", [0 0 0]);
#set(hRID, "color", [1 1 1]); # Invisible but selectable in pdf version
#title(""); # Kill title, and Kill 1/4-inch extra margin it claims:
#set(gcf(),"paperposition", get(gcf(),"paperposition")-[0 0 0 0.25])
print("tmp-$ofile");
EOF
pdfcroptobb "tmp-$ofile" "$ofile" # Crop to bb
done
# Traveltime Curves (Template Function):
produce_ttcurves() { # $1: station code
# $2, $3: seis indices
# $4: caxis limit
# $5: caxis limit for 2nd plot (optional)
# Create links to reference curves. User manually must define directory links
# "other..." to activate. Enables energy comparisons to a baseline run. (Link
# "other" to the baseline, "other2" and "other3" to other test-case runs.)
ncbase="traveltime-$1-xyz-normcurve"
[ -d other ] && ln -sf "other/${ncbase}_smooth.octv" "${ncbase}_common.octv"
[ -d other ] && ln -sf "other/${ncbase}.octv" "${ncbase}_other.octv"
[ -d other2 ] && ln -sf "other2/${ncbase}.octv" "${ncbase}_other2.octv"
[ -d other3 ] && ln -sf "other3/${ncbase}.octv" "${ncbase}_other3.octv"
octave -qf <<EOF
AR = array("seisfiles/seis_%03d.octv",$2,$3);
NORMCURVE = arrayimage(AR, [1 1 1], 2.0, [0 20]);
save("traveltime-$1-xyz-normcurve.octv", "NORMCURVE");
NC2 = NORMCURVE;
NORMCURVE = normcurve_fitpowerlaw(NORMCURVE,4,48);
save("traveltime-$1-xyz-normcurve_smooth.octv", "NORMCURVE");
if (exist("traveltime-$1-xyz-normcurve_common.octv","file")==2)
NORMCURVE = load("traveltime-$1-xyz-normcurve_common.octv").NORMCURVE;
if (exist("traveltime-$1-xyz-normcurve_other.octv","file")==2)
NC1 = load("traveltime-$1-xyz-normcurve_other.octv").NORMCURVE;
normcurve_compare(NC1, NC2, NORMCURVE);
print("traveltime-$1-xyz-etracecompare.png", "-r160");
end
end # Loads a common curve if one has been created (requires
# user intervention). If _othercurve also exists,
# then plot a comparisson.
## VARIANT 1: Make one with norm relative to best-fit NORMCURVE:
arrayimage(AR, [1 1 1], 2.0, [0 20], NORMCURVE, $4);
annotate_array([6.40,3.63],{"Pg","Lg"},23); # (mark phase velocities)
hRID = papertext(0.03, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal");
print("traveltime-$1-xyz-g2.0.png", "-r200");
## VARIANT 2: And make one where norm relative to local peak and average:
arrayimage(AR, [1 1 1], 2.0, [0 20], 0.5, ${5:-0});
annotate_array([6.40,3.63],{"Pg","Lg"},23); # (mark phase velocities)
hRID = papertext(0.03, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal");
set(findobj("tag", "colorbar"), "yticklabel", []); # kill colorbar labels
set(findobj("tag", "colorbar"), "ytick", []); # kill clrbar ticks too
# (Some versions octave broken and need to kill ticks too to kill labels.)
print("traveltime-$1-xyz-g2.0-nr.png", "-r200"); # PNG version
#set(hRID, "color", [1 1 1]); # Invisible but selectable in pdf version
#set(findobj("tag", "OLCapt3"), "color", [1 1 1]); # Same for NR label
newstr=get(findobj("tag", "OLCapt2"), "string");
newstr=sprintf("%s\n%s","Channel: Ex+Ey+Ez",newstr); # Add to OL2 label
set(findobj("tag", "OLCapt2"), "string", newstr);
#title(""); # Kill title
print("tmp-traveltime-$1-xyz-g2.0-nr.pdf"); # PDF version
EOF
pdfcroptobb "tmp-traveltime-$1-xyz-g2.0-nr.pdf" \
"traveltime-$1-xyz-g2.0-nr.pdf" # Crop to bb
}
# TT Curves:
produce_ttcurves PGX 0 47 8 0 # Station LGX
produce_ttcurves LGX 48 95 8 0 # Station PGX
produce_ttcurves PLG 96 143 8 0 # Station PLG
# Lapse Time Curves (Template Function):
produce_lapsecurves() { # $1: filename tag (eg station code if relevant)
# $2, $3: seis indices
# $4, $5: lapse times (default 0, 30)
phaseedge="[3.63, 0]"
axesxyz="[1,1,1]"
axestxt="xyz"
geospread=2
LT1="${4:-0}"
LT2="${5:-30}"
octave -qf <<EOF
AR1 = array("seisfiles/seis_%03d.octv",$2,$3);
AR2 = AR3 = AR4 = false; nAR = 1;
if (exist("other","dir")==7)
AR2 = array("other/seisfiles/seis_%03d.octv",$2,$3);
nAR += 1;
end
if (exist("other2","dir")==7)
AR3 = array("other2/seisfiles/seis_%03d.octv",$2,$3);
nAR += 1;
end
if (exist("other3","dir")==7)
AR4 = array("other3/seisfiles/seis_%03d.octv",$2,$3);
nAR += 1;
end
ARs = {AR1,AR2,AR3,AR4};
QScatInt = $QScatInt; # TEMP need way get from source
LineWidths = {7, 5, 3, 1};
LineStyles = {"-", "-.", ":", "-"};
LgEdge = $phaseedge; # [v, t0]
LWindow1 = $LT1 + [0 15];
LWindow2 = $LT2 + [0 70];
lapsetimebaseplot();
global linestyle;
for i=1:nAR
linestyle.style = LineStyles{i};
linestyle.width = LineWidths{i};
lapsetimecurve(ARs{i}, QScatInt{i}, $axesxyz, $geospread,
LgEdge, LWindow1, LWindow2);
end
axis([0 25, 0.0001 10]);
titletxt = sprintf(
"Blue: Early window (%d to %d s); Green: Late window (%d to %d s)",
LWindow1(1), LWindow1(2), LWindow2(1), LWindow2(2)
);
title(titletxt, "fontweight", "bold");
hlgnd = findobj(gcf(),"type","axes","Tag","legend");
set(hlgnd, "fontweight", "bold", "FontSize", 8);
print("tmp-LapseTime-$1-$axestxt.pdf");
print("LapseTime-$1-$axestxt.png","-r200");
EOF
pdfcroptobb "tmp-LapseTime-$1-$axestxt.pdf" \
"LapseTime-$1-$axestxt.pdf" # Crop to bb
}
# Lapse Time curves:
QScatInt='{[2058 1000], [1234 1235]}' # TEMP
produce_lapsecurves LGX 48 95 0 30 # Lg Lapse Time curve at LGX
## (Do not edit/remove this comment block.)
## ___FIG_GEN_END___
##
cd "$rwd"
echo End Figure Generation: `date +"%Y.%m.%d-%H:%M:%S"` >> "$LOGFILE"
echo '///'
echo "Figure generation complete. To re-run figures, run 'do-figsonly.sh' in"
echo "the output directory, which may be modified to customize figure output."
echo "Output has been placed in $outdir."
echo "Logfile contents:"
cat "$outdir"/logfile
## END
##