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do-halfspace-nearsrc50.sh
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#!/bin/bash
##
## "DO"-script for a Radiative3D run:
##
## Copy and edit this file to easily specify (and remember)
## parameters used for a particular run.
##
## If $1 is set, it is used as an extra identifier token in the
## output directory name.
##
## (Note: Do not edit line 3. It is used by subsequent scripts to
## identify this file as a "do script". (See wikify.sh.))
##
source scripts/do-fundamentals.sh
##
## This DO-SCRIPT sets up a run based on a HALFSPACE model with up to
## ONE interface layer.
##
## One-liner description: (Keep this BRIEF.)
##
INTENT="Looking at range no further than 10x source depth."
CAMPAIGN="" ## (e.g. "For AGU Poster Dec 2016" or some such.)
SIMTARGET="waveform" # Choice: 'waveform' or 'video'. Affects
# defaults not otherwise specified.
MODIDX=40 # HALFSPACE # Model Index: Selects from custom coded models.
# 1: Lop Nor (base or moho depends on COMPARGS),
# 5: North Sea Crust Pinch model,
# 8: Crust Upthrust model
# 40: Halfspace model
event=eq # 'eq' or 'expl' - See case statement below for choices
EQISOFRAC=0.0 # Iso fraction for EQ event (choose from range [-1.0, 1.0])
##
## Epicenter and Station Locations
##
EPIXYZ=0,0,0 #
STAXYZ=35.356,35.356,0 # Station 'A', 50 km to the NE; Pg azimuth
STBXYZ=50,0,0 # Station 'B', 50 km to the East; Lg azimuth
STCXYZ=46.194,-19.135,0 # Station 'C', 50 km to the ESE; mixed Pg/Lg
FREQ=2.0 # Phonon frequency to model
NUMPHONS=10M # Number of phonons to spray (Recommend: 140M)
RECTIME=125 # Recording duration of seismometers (seconds).
BINSIZE=0.10 # Seismometer time-bin size in seconds
GATHER=0.0211,2.0 # Terminal gather radius, in kilometers.
R0=0.5263 # Range of first receiver in array
NSEIS=48 # Number of receivers per linear array
CYLRAD=700 # Total (cylindrical) radius of model.
# (Phonons exceeding this radius from XY
# = (0,0), or this travel time from t=0,
# are abandoned.)
SCAT1=0.8,0.01,1.0,0.5,1000 # Scat Args (nu,eps,a,kappa) and Q in top layer
SCAT2=0.8,0.01,1.0,0.5,1000 # Scat Args (nu,eps,a,kappa) and Q in bot layer
VPVS1=6.40,3.63,2.83,-60 # Seismic attrs (Vp, Vs, rho, z-bottom) top layer
VPVS2=6.40,3.63,2.83,-400 # Seismic attrs (Vp, Vs, rho, z-bottom) bot layer
# (Note: Q's specified are Q_s values.
# Q_p is computed from assumption that
# Q_kappa is infinite.)
COMPARGS=$SCAT1,$SCAT2,$VPVS1,$VPVS2
#FLATTEN="--flatten" # If set to "--flatten", apply Earth-flattening
FLATTEN="" # transformation to depths and velocities.
# (Set to "" to disable.)
ADDITIONAL="" # Additional params. (Such as --ocsraw,
# or --earthrad=xxxx) Radii: Earth: 6371 km,
# Mars: 3389, Mercury: 2440, Earth's
# moon: 1737
#
# Event Parameters:
#
case "$event" in
expl) # Generic explosion
SOURCELOC=0,0,-5 # Origin, 5km deep
SOURCETYP=EXPL #
;;
eq) # Generic earthquake
SOURCELOC=0,0,-5 # Origin, 5km deep
SOURCETYP=SDR,0,90,0,$EQISOFRAC # Basic Strike-Slip
;;
*)
echo Event code not recognized.
exit
;;
esac
SEISORIG1=$EPIXYZ # Array locations:
SEISORIG2=$EPIXYZ #
SEISORIG3=$EPIXYZ #
SEISDEST1=$STAXYZ #
SEISDEST2=$STBXYZ #
SEISDEST3=$STCXYZ #
SEIS1=--seis-p2p=$SEISORIG1,$SEISDEST1,$R0,$GATHER,$NSEIS
SEIS2=--seis-p2p=$SEISORIG2,$SEISDEST2,$R0,$GATHER,$NSEIS
SEIS3=--seis-p2p=$SEISORIG3,$SEISDEST3,$R0,$GATHER,$NSEIS
## RUN THE SIMULATION:
##
## Set up output directory and run the sim:
##
PopDefaults $SIMTARGET ## Defined in do-fundamentals.sh
CheckBuildStatus ## ''
CreateOutputDirectory $@ ## ''
RunSimulation ## ''
echo Begin Figure Generation: >> "$LOGFILE"
rwd=`pwd` # Switch to output directory - the rest of our work
cd "$outdir" # will be done there.
## (Do not edit/remove this comment block.)
#!/bin/bash
## ___FIG_GEN_START___
##
## # Note: this part of the do-script will
## GENERATE FIGURES AND GRAPHICS: # be carved off into 'do-figsonly.sh'
## # to facilitate re-running and/or
# customizing figure output after the
# initial run.
# Organize seisfiles
mkdir -p seisfiles # Stash seis files in a subdirectory (aesthetics)
mv seis_???.octv seisfiles/ 2> /dev/null || : # (suppress error msg and code)
# Text values for Wiki script:
cat > wikify.incl <<EOF
STA="PGX"
STB="LGX"
STC="PLG"
MODELCODE="HLF"
EOF
# Determine RunID from name of do-script: (for labeling figs)
SHFILE=RUNID
for file in *.sh; do
if grep -qx '## "DO"-script for a Radiative3D run:' "$file"
then # Catch ONLY file with R3D do marker
SHFILE="$file" # Also catches no more than one do- file
fi #
done
RUNID=${SHFILE%.sh}
RUNID=${RUNID#do-}
echo "Found RunID: $RUNID"
# Some octave/gnuplot set-up and platform-independence stuff:
alias octave="octave --no-window-system" # Prevents trouble on some systems.
export GNUTERM="dumb" # Ascii, but we don't disply so is OK.
shopt -s expand_aliases # Aliases in scripts... needs enabled.
reverser="tac" # Linux has tac (backwords cat)
[ "`uname`" == "Darwin" ] && reverser="tail -r" # But OS X has 'tail -r',...
revtail() { $reverser | tail $@ | $reverser; } # 'head' with neg line count
# does not work on OS X, so
# use revtail in its place.
if [ -x "`which pdfcrop 2> /dev/null`" ]; then # Check whether pdfcrop is
pdfcroptobb() { # $1=tmp-file $2=ouputfile # installed. If yes, then
pdfcrop --margins 0 "$1" "$2" >/dev/null # define pdfcroptobb (PDF-Crop-
rm "$1" # to-Bounding-Box), otherwise
} else # define a dummy function.
pdfcroptobb() { #
echo "pdfcrop not installed.";
mv "$1" "$2"; }
fi
# Make seismometer and model maps:
echo "Plotting model maps and cross-sections."
cat stdout.txt | \
grep -A 10000 "# R3D_GRID:" | \
grep -B 10000 "# END R3D_GRID" | \
revtail -n +2 | \
tail -n +9 | \
sed 's/\*\*\*/000/g' > griddump.txt
octave -qf <<"EOF"
## Seismometer Map:
seismap("seisfiles/seis_???.octv","out_mparams.octv",
[-10.8 54 -10 38.6], [45 95 118], {"PGX","LGX","PLG"});
legend("hide"); # (We're not using separate P and S gather anymore)
print("seismap.png","-r200"); # PNG version for wiki
print("tmp-seismap.pdf"); # PDF version for publication
## LOP to MAK:
modelplot("griddump.txt", [1 2], {"SRC","PGX"},
"out_mparams.octv",
"seisfiles/seis_%03d.octv",
[0,1:2:47]);
print("profile-LOP-MAK.png","-r200"); # PNG version for wiki
#delete(findall("tag","sourcemark")); # Remove source marker for publication
#delete(findall("tag","seismometer"));# Remove seismometer marks if desired
print("tmp-profile-LOP-MAK.pdf"); # PDF version for publication
## LOP to WUS:
modelplot("griddump.txt", [1 3], {"SRC","LGX"},
"out_mparams.octv",
"seisfiles/seis_%03d.octv",
[48,49:2:95]);
print("profile-LOP-WUS.png","-r200");
## WUS to MAK:
modelplot("griddump.txt", [3 2], {"LGX","PGX"},
"out_mparams.octv",
"",
[]);
print("profile-WUS-MAK.png","-r200");
EOF
pdfcroptobb "tmp-seismap.pdf" "seismap.pdf" # Crop to bb
pdfcroptobb "tmp-profile-LOP-MAK.pdf" "profile-LOP-MAK.pdf"
# Seismograms:
if [ "$1" != "noseis" ]; then
echo "Plotting envelopes..."
for file in seisfiles/{seis_{000,048,096},seis_?[02479][357]}.octv ; do
ofile=`basename "${file%.octv}.png"` # PNG's for wiki
echo $ofile
octave -qf << EOF
seisplot("$file");
papertext(0.01, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal", "color", [0 0 0]);
print("$ofile","-r200");
EOF
done
fi
for file in seisfiles/{seis_047.octv,seis_095.octv,seis_143.octv} ; do
ofile=`basename "${file%.octv}.pdf"` # PDF for publication
echo $ofile
octave -qf << EOF
seisplot("$file");
hRID = papertext(0.01, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal", "color", [0 0 0]);
#set(hRID, "color", [1 1 1]); # Invisible but selectable in pdf version
#title(""); # Kill title, and Kill 1/4-inch extra margin it claims:
#set(gcf(),"paperposition", get(gcf(),"paperposition")-[0 0 0 0.25])
print("tmp-$ofile");
EOF
pdfcroptobb "tmp-$ofile" "$ofile" # Crop to bb
done
# Traveltime Curves (Template Function):
produce_ttcurves() { # $1: station code
# $2, $3: seis indices
# $4: caxis limit
# $5: caxis limit for 2nd plot (optional)
# Create links to reference curves. User manually must define directory links
# "other..." to activate. Enables energy comparisons to a baseline run. (Link
# "other" to the baseline, "other2" and "other3" to other test-case runs.)
ncbase="traveltime-$1-xyz-normcurve"
[ -d other ] && ln -sf "other/${ncbase}_smooth.octv" "${ncbase}_common.octv"
[ -d other ] && ln -sf "other/${ncbase}.octv" "${ncbase}_other.octv"
[ -d other2 ] && ln -sf "other2/${ncbase}.octv" "${ncbase}_other2.octv"
[ -d other3 ] && ln -sf "other3/${ncbase}.octv" "${ncbase}_other3.octv"
octave -qf <<EOF
AR = array("seisfiles/seis_%03d.octv",$2,$3);
NORMCURVE = arrayimage(AR, [1 1 1], 2.0, [0 20]);
save("traveltime-$1-xyz-normcurve.octv", "NORMCURVE");
NC2 = NORMCURVE;
NORMCURVE = normcurve_fitpowerlaw(NORMCURVE,4,48);
save("traveltime-$1-xyz-normcurve_smooth.octv", "NORMCURVE");
if (exist("traveltime-$1-xyz-normcurve_common.octv","file")==2)
NORMCURVE = load("traveltime-$1-xyz-normcurve_common.octv").NORMCURVE;
if (exist("traveltime-$1-xyz-normcurve_other.octv","file")==2)
NC1 = load("traveltime-$1-xyz-normcurve_other.octv").NORMCURVE;
normcurve_compare(NC1, NC2, NORMCURVE);
print("traveltime-$1-xyz-etracecompare.png", "-r160");
end
end # Loads a common curve if one has been created (requires
# user intervention). If _othercurve also exists,
# then plot a comparisson.
## VARIANT 1: Make one with norm relative to best-fit NORMCURVE:
arrayimage(AR, [1 1 1], 2.0, [0 20], NORMCURVE, $4);
annotate_array([6.40,3.63],{"Pg","Lg"},46); # (mark phase velocities)
hRID = papertext(0.03, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal");
print("traveltime-$1-xyz-g2.0.png", "-r200");
## VARIANT 2: And make one where norm relative to local peak and average:
arrayimage(AR, [1 1 1], 2.0, [0 20], 0.5, ${5:-0});
annotate_array([6.40,3.63],{"Pg","Lg"},46); # (mark phase velocities)
hRID = papertext(0.03, 0.00, "$RUNID", ## Plot RunID in lowerleft corner
"verticalalignment", "bottom", "horizontalalignment", "left",
"fontsize", 5, "fontweight", "normal");
set(findobj("tag", "colorbar"), "yticklabel", []); # kill colorbar labels
set(findobj("tag", "colorbar"), "ytick", []); # kill clrbar ticks too
# (Some versions octave broken and need to kill ticks too to kill labels.)
print("traveltime-$1-xyz-g2.0-nr.png", "-r200"); # PNG version
#set(hRID, "color", [1 1 1]); # Invisible but selectable in pdf version
#set(findobj("tag", "OLCapt3"), "color", [1 1 1]); # Same for NR label
newstr=get(findobj("tag", "OLCapt2"), "string");
newstr=sprintf("%s\n%s","Channel: Ex+Ey+Ez",newstr); # Add to OL2 label
set(findobj("tag", "OLCapt2"), "string", newstr);
#title(""); # Kill title
print("tmp-traveltime-$1-xyz-g2.0-nr.pdf"); # PDF version
EOF
pdfcroptobb "tmp-traveltime-$1-xyz-g2.0-nr.pdf" \
"traveltime-$1-xyz-g2.0-nr.pdf" # Crop to bb
}
# TT Curves:
produce_ttcurves PGX 0 47 8 0 # Station LGX
produce_ttcurves LGX 48 95 8 0 # Station PGX
produce_ttcurves PLG 96 143 8 0 # Station PLG
# Lapse Time Curves (Template Function):
produce_lapsecurves() { # $1: filename tag (eg station code if relevant)
# $2, $3: seis indices
# $4, $5: lapse times (default 0, 30)
phaseedge="[3.63, 0]"
axesxyz="[1,1,1]"
axestxt="xyz"
geospread=2
LT1="${4:-0}"
LT2="${5:-30}"
QIntS="$(grep -A 10 '# R3D_GRID:' stdout.txt | grep '^ 0 0 0' | awk '{ print $11 }')"
QScatS="$(grep -A 6 '# BEGIN SCATTERER DUMP:' stdout.txt | grep -m 1 '^ ' | awk '{ print $5 * $9 }')"
echo "$QScatS $QIntS" > QScatIntS.txt
octave -qf <<EOF
AR1 = array("seisfiles/seis_%03d.octv",$2,$3);
ARs = {AR1}; nAR = 1;
QScatInt = {load("QScatIntS.txt")};
otherdirs = {"other"};
for (i=1:25); otherdirs{end+1} = sprintf("other%d",i); end
for (i=1:length(otherdirs))
if (exist(otherdirs{i},"dir")==7)
filepattern = sprintf("%s%s",otherdirs{i},"/seisfiles/seis_%03d.octv");
AR = array(filepattern,$2,$3);
ARs{end+1} = AR; nAR += 1;
QScatInt{end+1} = load(sprintf("%s/QScatIntS.txt",otherdirs{i}));
end
end
LineWidths = {7,6,5,4,3,2,1};
LineStyles = {"-", "-.", ":"};
LgEdge = $phaseedge; # [v, t0]
LWindow1 = $LT1 + [0 15];
LWindow2 = $LT2 + [0 70];
lapsetimebaseplot();
global linestyle;
R1R2data = [];
for i=1:nAR
linestyle.style = LineStyles{mod(i-1,length(LineStyles))+1};
linestyle.width = LineWidths{mod(i-1,length(LineWidths))+1};
data = lapsetimecurve(ARs{i}, QScatInt{i}, $axesxyz,
$geospread, LgEdge, LWindow1, LWindow2);
R1R2data = [R1R2data; data];
end
R1R2data
axis([0 50, 0.0001 10]);
titletxt = sprintf(
"Blue: Early window (%d to %d s); Green: Late window (%d to %d s)",
LWindow1(1), LWindow1(2), LWindow2(1), LWindow2(2)
);
title(titletxt, "fontweight", "bold");
hlgnd = findobj(gcf(),"type","axes","Tag","legend");
set(hlgnd, "fontweight", "bold", "FontSize", 8);
print("tmp-LapseTime-$1-$axestxt.pdf");
print("LapseTime-$1-$axestxt.png","-r200");
EOF
pdfcroptobb "tmp-LapseTime-$1-$axestxt.pdf" \
"LapseTime-$1-$axestxt.pdf" # Crop to bb
}
# Lapse Time curves:
produce_lapsecurves LGX 48 95 0 30 # Lg Lapse Time curve at LGX
## (Do not edit/remove this comment block.)
## ___FIG_GEN_END___
##
cd "$rwd"
echo End Figure Generation: `date +"%Y.%m.%d-%H:%M:%S"` >> "$LOGFILE"
echo '///'
echo "Figure generation complete. To re-run figures, run 'do-figsonly.sh' in"
echo "the output directory, which may be modified to customize figure output."
echo "Output has been placed in $outdir."
echo "Logfile contents:"
cat "$outdir"/logfile
## END
##