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awstest.yml
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name: nf-core AWS test
# This workflow can be triggered manually with the GitHub actions workflow dispatch button.
# It runs the -profile 'test' on AWS batch
on:
workflow_dispatch:
jobs:
run-platform:
name: Run AWS tests
if: github.repository == 'nf-core/concatqc'
runs-on: ubuntu-latest
steps:
# Launch workflow using Seqera Platform CLI tool action
- name: Launch workflow via Seqera Platform
uses: seqeralabs/action-tower-launch@v2
with:
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
revision: ${{ github.sha }}
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/concatqc/work-${{ github.sha }}
parameters: |
{
"outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/concatqc/results-test-${{ github.sha }}"
}
profiles: test
- uses: actions/upload-artifact@v4
with:
name: Seqera Platform debug log file
path: |
seqera_platform_action_*.log
seqera_platform_action_*.json