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lpsolve - NoClassDefFoundError #41

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neelz040 opened this issue Nov 25, 2016 · 11 comments
Open

lpsolve - NoClassDefFoundError #41

neelz040 opened this issue Nov 25, 2016 · 11 comments
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Not reproducible

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@neelz040
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neelz040 commented Nov 25, 2016 •
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I am trying to run the ILP algorithm through RapidProM Extension 4.0.1 on a Mac OS 10.11.6 (El Capitan).

I reinstalled the RapidProM extension through the marketplace of the RapidMiner Studio.

It ran one day after initial installation. I did not do anything strange after that except clean my download folder and bin (??). Although I do not think this is the problem.

Exception: java.lang.NoClassDefFoundError
Message: Could not initialize class org.processmining.lpengines.implementations.LPEngineLpSolveImpl
Stack trace:

org.processmining.lpengines.factories.LPEngineFactory.createLPEngine(LPEngineFactory.java:18)
org.processmining.lpengines.factories.LPEngineFactory.createLPEngine(LPEngineFactory.java:10)
org.processmining.hybridilpminer.plugins.HybridILPMinerPlugin.mine(HybridILPMinerPlugin.java:97)
org.rapidprom.operators.discovery.ILPMinerOperator.doWork(ILPMinerOperator.java:68)
com.rapidminer.operator.Operator.execute(Operator.java:1005)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$3.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$3.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.OperatorChain.doWork(OperatorChain.java:428)
com.rapidminer.operator.Operator.execute(Operator.java:1005)
com.rapidminer.Process.run(Process.java:1205)
com.rapidminer.Process.run(Process.java:1101)
com.rapidminer.Process.run(Process.java:1054)
com.rapidminer.Process.run(Process.java:1049)
com.rapidminer.Process.run(Process.java:1039)
com.rapidminer.gui.ProcessThread.run(ProcessThread.java:65)
@neelz040
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So, it works again ! I cannot tell you what I did because I don't know?? I am happy it works though :-)

@neelz040
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Maybe simple restart of my mac?

@abolt
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abolt commented Nov 25, 2016

Hahaha well... not ideal, but if someone else has this same problem please let me know

@abolt abolt closed this as completed Nov 25, 2016
@s-j-v-zelst s-j-v-zelst reopened this Nov 30, 2016
@s-j-v-zelst
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it still appears, see issue #43
the ProM resource is not the same as the RapidProM resource, i.e. the lpsolve55j.jni file.
It might be related to that

@s-j-v-zelst s-j-v-zelst mentioned this issue Nov 30, 2016
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@s-j-v-zelst
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I've tested this on my macbook (from the source code) and i can not reproduce the error, lpsolve just works.

@abolt
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abolt commented Nov 30, 2016 •
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I just freshly installed rapidminer and rapidprom (from the marketplce) in my macbook pro and it just works...
screen shot 2016-11-30 at 10 52 15 am

@s-j-v-zelst
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It seems that for the other student that had the problem, restarting also did the trick.

@neelz040
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Restarting my notebook has so far always 'fixed' this issue. Just had it again

@den1den den1den mentioned this issue Jan 11, 2017
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@benyaminsalimi
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I have the same problem, and I just restart my mac and problem is gone! I have no idea about this!

@RaphaelBijiaoui
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I stumble upon the problem and I reporduce it each time I run a "Conformance Checking" componant (MXML LegacyClassifier selected, the only option though).
For my testing I started with the first tutorial provided with rapid prom and started eliminated component from finish to start until the error is no more encountered. Seems "Conformance Checking" is the one responsible. any idea ? (RapidMiner 9.0, RapidProm 4.0.0.1)

@jteijema
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jteijema commented Apr 1, 2019 •
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HI, I'm having this problem too. It's combined with a lot of other errors in the rapidprom extention:

Using the ILP Miner gives:
`Exception: java.lang.NoClassDefFoundError
Message: Could not initialize class org.processmining.lpengines.implementations.LPEngineLpSolveImpl
Stack trace:

org.processmining.lpengines.factories.LPEngineFactory.createLPEngine(LPEngineFactory.java:18)
org.processmining.lpengines.factories.LPEngineFactory.createLPEngine(LPEngineFactory.java:10)
org.processmining.hybridilpminer.plugins.HybridILPMinerPlugin.mine(HybridILPMinerPlugin.java:97)
org.rapidprom.operators.discovery.ILPMinerOperator.doWork(ILPMinerOperator.java:68)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.collections.CollectionIterationOperator.doWork(CollectionIterationOperator.java:118)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.OperatorChain.doWork(OperatorChain.java:423)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.Process.executeRoot(Process.java:1386)
com.rapidminer.Process.execute(Process.java:1327)
com.rapidminer.Process.run(Process.java:1300)
com.rapidminer.Process.run(Process.java:1186)
com.rapidminer.Process.run(Process.java:1139)
com.rapidminer.Process.run(Process.java:1134)
com.rapidminer.Process.run(Process.java:1124)
com.rapidminer.gui.ProcessThread.run(ProcessThread.java:65)`

Using the alpha miner on classic gives:
`Exception: java.lang.NoClassDefFoundError
Message: org/processmining/plugins/pnml/base/PnmlElementFactory
Stack trace:

org.processmining.acceptingpetrinet.models.impl.AcceptingPetriNetFactory.createAcceptingPetriNet(AcceptingPetriNetFactory.java:40)
org.processmining.alphaminer.algorithms.AlphaClassicMinerImpl.runAccPN(AlphaClassicMinerImpl.java:115)
org.processmining.alphaminer.algorithms.AlphaClassicMinerImpl.run(AlphaClassicMinerImpl.java:87)
org.processmining.alphaminer.plugins.AlphaMinerPlugin.apply(AlphaMinerPlugin.java:43)
org.processmining.alphaminer.plugins.AlphaMinerPlugin.apply(AlphaMinerPlugin.java:54)
org.processmining.alphaminer.plugins.AlphaMinerPlugin.applyAlphaClassic(AlphaMinerPlugin.java:75)
org.rapidprom.operators.discovery.AlphaMinerOperator.doWork(AlphaMinerOperator.java:70)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.collections.CollectionIterationOperator.doWork(CollectionIterationOperator.java:118)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.OperatorChain.doWork(OperatorChain.java:423)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.Process.executeRoot(Process.java:1386)
com.rapidminer.Process.execute(Process.java:1327)
com.rapidminer.Process.run(Process.java:1300)
com.rapidminer.Process.run(Process.java:1186)
com.rapidminer.Process.run(Process.java:1139)
com.rapidminer.Process.run(Process.java:1134)
com.rapidminer.Process.run(Process.java:1124)
com.rapidminer.gui.ProcessThread.run(ProcessThread.java:65)

Cause
Exception: java.lang.ClassNotFoundException
Message: org.processmining.plugins.pnml.base.PnmlElementFactory
Stack trace:

java.net.URLClassLoader.findClass(URLClassLoader.java:381)
com.rapidminer.tools.plugin.PluginClassLoader.loadClass(PluginClassLoader.java:131)
java.lang.ClassLoader.loadClass(ClassLoader.java:357)
org.processmining.acceptingpetrinet.models.impl.AcceptingPetriNetFactory.createAcceptingPetriNet(AcceptingPetriNetFactory.java:40)
org.processmining.alphaminer.algorithms.AlphaClassicMinerImpl.runAccPN(AlphaClassicMinerImpl.java:115)
org.processmining.alphaminer.algorithms.AlphaClassicMinerImpl.run(AlphaClassicMinerImpl.java:87)
org.processmining.alphaminer.plugins.AlphaMinerPlugin.apply(AlphaMinerPlugin.java:43)
org.processmining.alphaminer.plugins.AlphaMinerPlugin.apply(AlphaMinerPlugin.java:54)
org.processmining.alphaminer.plugins.AlphaMinerPlugin.applyAlphaClassic(AlphaMinerPlugin.java:75)
org.rapidprom.operators.discovery.AlphaMinerOperator.doWork(AlphaMinerOperator.java:70)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.collections.CollectionIterationOperator.doWork(CollectionIterationOperator.java:118)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.OperatorChain.doWork(OperatorChain.java:423)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.Process.executeRoot(Process.java:1386)
com.rapidminer.Process.execute(Process.java:1327)
com.rapidminer.Process.run(Process.java:1300)
com.rapidminer.Process.run(Process.java:1186)
com.rapidminer.Process.run(Process.java:1139)
com.rapidminer.Process.run(Process.java:1134)
com.rapidminer.Process.run(Process.java:1124)
com.rapidminer.gui.ProcessThread.run(ProcessThread.java:65)`

Using the conformance checker on ILP replayer:
`Exception: java.lang.NoClassDefFoundError
Message: Could not initialize class lpsolve.LpSolve
Stack trace:

nl.tue.astar.util.ilp.SparseLPMatrix$LPSOLVE.toSolver(SparseLPMatrix.java:27)
nl.tue.astar.util.ilp.LPMatrix$SPARSE$LPSOLVE.toSolver(LPMatrix.java:44)
nl.tue.astar.util.ilp.SparseLPMatrix$LPSOLVE.toSolver(SparseLPMatrix.java:18)
org.processmining.plugins.astar.petrinet.impl.AbstractPILPDelegate.(AbstractPILPDelegate.java:249)
org.processmining.plugins.astar.petrinet.impl.PILPDelegate.(PILPDelegate.java:87)
org.processmining.plugins.astar.petrinet.impl.PILPDelegate.(PILPDelegate.java:60)
org.processmining.plugins.astar.petrinet.PetrinetReplayerWithILP.getDelegate(PetrinetReplayerWithILP.java:62)
org.processmining.plugins.astar.petrinet.PetrinetReplayerWithILP.getDelegate(PetrinetReplayerWithILP.java:20)
org.processmining.plugins.astar.petrinet.AbstractPetrinetReplayer.replayLog(AbstractPetrinetReplayer.java:427)
org.rapidprom.operators.conformance.ConformanceAnalysisOperator.getAlignment(ConformanceAnalysisOperator.java:328)
org.rapidprom.operators.conformance.ConformanceAnalysisOperator$ALIGNMENT_CALCULATOR.call(ConformanceAnalysisOperator.java:241)
org.rapidprom.operators.conformance.ConformanceAnalysisOperator$ALIGNMENT_CALCULATOR.call(ConformanceAnalysisOperator.java:223)
java.util.concurrent.FutureTask.run(FutureTask.java:266)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
java.lang.Thread.run(Thread.java:748)
java.util.concurrent.FutureTask.report(FutureTask.java:122)
java.util.concurrent.FutureTask.get(FutureTask.java:206)
org.rapidprom.operators.util.FutureRapidProM.get(FutureRapidProM.java:42)
com.google.common.util.concurrent.SimpleTimeLimiter.callWithTimeout(SimpleTimeLimiter.java:130)
org.rapidprom.operators.conformance.ConformanceAnalysisOperator.doWork(ConformanceAnalysisOperator.java:206)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.collections.CollectionIterationOperator.doWork(CollectionIterationOperator.java:118)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.OperatorChain.doWork(OperatorChain.java:423)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.Process.executeRoot(Process.java:1386)
com.rapidminer.Process.execute(Process.java:1327)
com.rapidminer.Process.run(Process.java:1300)
com.rapidminer.Process.run(Process.java:1186)
com.rapidminer.Process.run(Process.java:1139)
com.rapidminer.Process.run(Process.java:1134)
com.rapidminer.Process.run(Process.java:1124)
com.rapidminer.gui.ProcessThread.run(ProcessThread.java:65)`

Reinstalled everything, cleared caches, restarted everything. Kinda out of ideas. Hope you can help.

edit: forgot this one
Exception: java.lang.UnsatisfiedLinkError
Message: no lpsolve55 in java.library.path
Stack trace:

java.lang.ClassLoader.loadLibrary(ClassLoader.java:1867)
java.lang.Runtime.loadLibrary0(Runtime.java:870)
java.lang.System.loadLibrary(System.java:1122)
org.processmining.lpengines.implementations.LPEngineLpSolveImpl.init(LPEngineLpSolveImpl.java:24)
org.processmining.lpengines.implementations.LPEngineLpSolveImpl.(LPEngineLpSolveImpl.java:19)
org.processmining.lpengines.factories.LPEngineFactory.createLPEngine(LPEngineFactory.java:18)
org.processmining.lpengines.factories.LPEngineFactory.createLPEngine(LPEngineFactory.java:10)
org.processmining.hybridilpminer.plugins.HybridILPMinerPlugin.mine(HybridILPMinerPlugin.java:97)
org.rapidprom.operators.discovery.ILPMinerOperator.doWork(ILPMinerOperator.java:68)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:77)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:812)
com.rapidminer.operator.ExecutionUnit$2.run(ExecutionUnit.java:807)
java.security.AccessController.doPrivileged(Native Method)
com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:807)
com.rapidminer.operator.OperatorChain.doWork(OperatorChain.java:423)
com.rapidminer.operator.Operator.execute(Operator.java:1026)
com.rapidminer.Process.executeRoot(Process.java:1386)
com.rapidminer.Process.execute(Process.java:1327)
com.rapidminer.Process.run(Process.java:1300)
com.rapidminer.Process.run(Process.java:1186)
com.rapidminer.Process.run(Process.java:1139)
com.rapidminer.Process.run(Process.java:1134)
com.rapidminer.Process.run(Process.java:1124)
com.rapidminer.gui.ProcessThread.run(ProcessThread.java:65)

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@s-j-v-zelst @benyaminsalimi @neelz040 @RaphaelBijiaoui @abolt @jteijema