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Planar Data Classification.py
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Planar Data Classification.py
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import matplotlib.pyplot as plt
import numpy as np
import sklearn
import sklearn.datasets
import sklearn.linear_model
figures = []
fig_num = 1
#########################################################################################################
def plot_decision_boundary(model, X, y, custom_plot=1):
global fig_num
# Set min and max values and give it some padding
x_min, x_max = X[0, :].min() - 1, X[0, :].max() + 1
y_min, y_max = X[1, :].min() - 1, X[1, :].max() + 1
h = 0.01
# Generate a grid of points with distance h between them
xx, yy = np.meshgrid(np.arange(x_min, x_max, h), np.arange(y_min, y_max, h))
# Predict the function value for the whole grid
Z = model(np.c_[xx.ravel(), yy.ravel()])
Z = Z.reshape(xx.shape)
# Plot the contour and training examples
if custom_plot == 1:
figures.append(plt.figure(fig_num))
fig_num += 1
plt.contourf(xx, yy, Z, cmap=plt.cm.Spectral)
plt.ylabel('x2')
plt.xlabel('x1')
plt.scatter(X[0, :], X[1, :], c=y, cmap=plt.cm.Spectral)
figures[fig_num - 2].show()
def sigmoid(x):
"""
Compute the sigmoid of x
Arguments:
x -- A scalar or numpy array of any size.
Return:
s -- sigmoid(x)
"""
s = 1 / (1 + np.exp(-x))
return s
def load_planar_dataset():
np.random.seed(1)
m = 400 # number of examples
N = int(m / 2) # number of points per class
D = 2 # dimensionality
X = np.zeros((m, D)) # data matrix where each row is a single example
Y = np.zeros((m, 1), dtype='uint8') # labels vector (0 for red, 1 for blue)
a = 4 # maximum ray of the flower
for j in range(2):
ix = range(N * j, N * (j + 1))
t = np.linspace(j * 3.12, (j + 1) * 3.12, N) + np.random.randn(N) * 0.2 # theta
r = a * np.sin(4 * t) + np.random.randn(N) * 0.2 # radius
X[ix] = np.c_[r * np.sin(t), r * np.cos(t)]
Y[ix] = j
X = X.T
Y = Y.T
return X, Y
def load_extra_datasets():
N = 200
noisy_circles = sklearn.datasets.make_circles(n_samples=N, factor=.5, noise=.3)
noisy_moons = sklearn.datasets.make_moons(n_samples=N, noise=.2)
blobs = sklearn.datasets.make_blobs(n_samples=N, random_state=5, n_features=2, centers=6)
gaussian_quantiles = sklearn.datasets.make_gaussian_quantiles(mean=None, cov=0.5, n_samples=N, n_features=2,
n_classes=2, shuffle=True, random_state=None)
no_structure = np.random.rand(N, 2), np.random.rand(N, 2)
return noisy_circles, noisy_moons, blobs, gaussian_quantiles, no_structure
##################################################################################################################
##################################################################################################################
def layer_sizes_test_case():
np.random.seed(1)
X_assess = np.random.randn(5, 3)
Y_assess = np.random.randn(2, 3)
return X_assess, Y_assess
def initialize_parameters_test_case():
n_x, n_h, n_y = 2, 4, 1
return n_x, n_h, n_y
def forward_propagation_test_case():
np.random.seed(1)
X_assess = np.random.randn(2, 3)
b1 = np.random.randn(4, 1)
b2 = np.array([[-1.3]])
parameters = {'W1': np.array([[-0.00416758, -0.00056267],
[-0.02136196, 0.01640271],
[-0.01793436, -0.00841747],
[0.00502881, -0.01245288]]),
'W2': np.array([[-0.01057952, -0.00909008, 0.00551454, 0.02292208]]),
'b1': b1,
'b2': b2}
return X_assess, parameters
def compute_cost_test_case():
np.random.seed(1)
Y_assess = (np.random.randn(1, 3) > 0)
parameters = {'W1': np.array([[-0.00416758, -0.00056267],
[-0.02136196, 0.01640271],
[-0.01793436, -0.00841747],
[0.00502881, -0.01245288]]),
'W2': np.array([[-0.01057952, -0.00909008, 0.00551454, 0.02292208]]),
'b1': np.array([[0.],
[0.],
[0.],
[0.]]),
'b2': np.array([[0.]])}
a2 = (np.array([[0.5002307, 0.49985831, 0.50023963]]))
return a2, Y_assess, parameters
def backward_propagation_test_case():
np.random.seed(1)
X_assess = np.random.randn(2, 3)
Y_assess = (np.random.randn(1, 3) > 0)
parameters = {'W1': np.array([[-0.00416758, -0.00056267],
[-0.02136196, 0.01640271],
[-0.01793436, -0.00841747],
[0.00502881, -0.01245288]]),
'W2': np.array([[-0.01057952, -0.00909008, 0.00551454, 0.02292208]]),
'b1': np.array([[0.],
[0.],
[0.],
[0.]]),
'b2': np.array([[0.]])}
cache = {'A1': np.array([[-0.00616578, 0.0020626, 0.00349619],
[-0.05225116, 0.02725659, -0.02646251],
[-0.02009721, 0.0036869, 0.02883756],
[0.02152675, -0.01385234, 0.02599885]]),
'A2': np.array([[0.5002307, 0.49985831, 0.50023963]]),
'Z1': np.array([[-0.00616586, 0.0020626, 0.0034962],
[-0.05229879, 0.02726335, -0.02646869],
[-0.02009991, 0.00368692, 0.02884556],
[0.02153007, -0.01385322, 0.02600471]]),
'Z2': np.array([[0.00092281, -0.00056678, 0.00095853]])}
return parameters, cache, X_assess, Y_assess
def update_parameters_test_case():
parameters = {'W1': np.array([[-0.00615039, 0.0169021],
[-0.02311792, 0.03137121],
[-0.0169217, -0.01752545],
[0.00935436, -0.05018221]]),
'W2': np.array([[-0.0104319, -0.04019007, 0.01607211, 0.04440255]]),
'b1': np.array([[-8.97523455e-07],
[8.15562092e-06],
[6.04810633e-07],
[-2.54560700e-06]]),
'b2': np.array([[9.14954378e-05]])}
grads = {'dW1': np.array([[0.00023322, -0.00205423],
[0.00082222, -0.00700776],
[-0.00031831, 0.0028636],
[-0.00092857, 0.00809933]]),
'dW2': np.array([[-1.75740039e-05, 3.70231337e-03, -1.25683095e-03,
-2.55715317e-03]]),
'db1': np.array([[1.05570087e-07],
[-3.81814487e-06],
[-1.90155145e-07],
[5.46467802e-07]]),
'db2': np.array([[-1.08923140e-05]])}
return parameters, grads
def nn_model_test_case():
np.random.seed(1)
X_assess = np.random.randn(2, 3)
Y_assess = (np.random.randn(1, 3) > 0)
return X_assess, Y_assess
def predict_test_case():
np.random.seed(1)
X_assess = np.random.randn(2, 3)
parameters = {'W1': np.array([[-0.00615039, 0.0169021],
[-0.02311792, 0.03137121],
[-0.0169217, -0.01752545],
[0.00935436, -0.05018221]]),
'W2': np.array([[-0.0104319, -0.04019007, 0.01607211, 0.04440255]]),
'b1': np.array([[-8.97523455e-07],
[8.15562092e-06],
[6.04810633e-07],
[-2.54560700e-06]]),
'b2': np.array([[9.14954378e-05]])}
return parameters, X_assess
##################################################################################################################
np.random.seed(1) # set a seed so that the results are consistent
X, Y = load_planar_dataset()
# Visualize the data:
figures.append(plt.figure(fig_num))
fig_num += 1
plt.scatter(X[0, :], X[1, :], c=Y, s=40, cmap=plt.cm.Spectral)
figures[fig_num - 2].show()
shape_X = X.shape
shape_Y = Y.shape
m = X.shape[1] # training set size
print('The shape of X is: ' + str(shape_X))
print('The shape of Y is: ' + str(shape_Y))
print('I have m = %d training examples!' % (m))
# Train the logistic regression classifier
clf = sklearn.linear_model.LogisticRegressionCV()
clf.fit(X.T, Y.T)
# Plot the decision boundary for logistic regression
plot_decision_boundary(lambda x: clf.predict(x), X, Y)
plt.title("Logistic Regression")
# Print accuracy
LR_predictions = clf.predict(X.T)
print('Accuracy of logistic regression: %d ' % float(
(np.dot(Y, LR_predictions) + np.dot(1 - Y, 1 - LR_predictions)) / float(Y.size) * 100) +
'% ' + "(percentage of correctly labelled datapoints)")
# GRADED FUNCTION: layer_sizes
def layer_sizes(X, Y):
"""
Arguments:
X -- input dataset of shape (input size, number of examples)
Y -- labels of shape (output size, number of examples)
Returns:
n_x -- the size of the input layer
n_h -- the size of the hidden layer
n_y -- the size of the output layer
"""
### START CODE HERE ### (≈ 3 lines of code)
n_x = X.shape[0] # size of input layer
n_h = 4
n_y = Y.shape[0] # size of output layer
### END CODE HERE ###
return (n_x, n_h, n_y)
X_assess, Y_assess = layer_sizes_test_case()
(n_x, n_h, n_y) = layer_sizes(X_assess, Y_assess)
print("The size of the input layer is: n_x = " + str(n_x))
print("The size of the hidden layer is: n_h = " + str(n_h))
print("The size of the output layer is: n_y = " + str(n_y))
# GRADED FUNCTION: initialize_parameters
def initialize_parameters(n_x, n_h, n_y):
"""
Argument:
n_x -- size of the input layer
n_h -- size of the hidden layer
n_y -- size of the output layer
Returns:
params -- python dictionary containing your parameters:
W1 -- weight matrix of shape (n_h, n_x)
b1 -- bias vector of shape (n_h, 1)
W2 -- weight matrix of shape (n_y, n_h)
b2 -- bias vector of shape (n_y, 1)
"""
np.random.seed(2) # we set up a seed so that your output matches ours although the initialization is random.
### START CODE HERE ### (≈ 4 lines of code)
W1 = np.random.randn(n_h, n_x) * 0.01
b1 = np.zeros((n_h, 1))
W2 = np.random.randn(n_y, n_h) * 0.01
b2 = np.zeros((n_y, 1))
### END CODE HERE ###
assert (W1.shape == (n_h, n_x))
assert (b1.shape == (n_h, 1))
assert (W2.shape == (n_y, n_h))
assert (b2.shape == (n_y, 1))
parameters = {"W1": W1,
"b1": b1,
"W2": W2,
"b2": b2}
return parameters
n_x, n_h, n_y = initialize_parameters_test_case()
parameters = initialize_parameters(n_x, n_h, n_y)
print("W1 = " + str(parameters["W1"]))
print("b1 = " + str(parameters["b1"]))
print("W2 = " + str(parameters["W2"]))
print("b2 = " + str(parameters["b2"]))
# GRADED FUNCTION: forward_propagation
def forward_propagation(X, parameters):
"""
Argument:
X -- input data of size (n_x, m)
parameters -- python dictionary containing your parameters (output of initialization function)
Returns:
A2 -- The sigmoid output of the second activation
cache -- a dictionary containing "Z1", "A1", "Z2" and "A2"
"""
# Retrieve each parameter from the dictionary "parameters"
### START CODE HERE ### (≈ 4 lines of code)
W1 = parameters["W1"]
b1 = parameters["b1"]
W2 = parameters["W2"]
b2 = parameters["b2"]
### END CODE HERE ###
# Implement Forward Propagation to calculate A2 (probabilities)
### START CODE HERE ### (≈ 4 lines of code)
Z1 = np.dot(W1, X) + b1
A1 = np.tanh(Z1)
Z2 = np.dot(W2, A1) + b2
A2 = sigmoid(Z2)
### END CODE HERE ###
assert (A2.shape == (1, X.shape[1]))
cache = {"Z1": Z1,
"A1": A1,
"Z2": Z2,
"A2": A2}
return A2, cache
X_assess, parameters = forward_propagation_test_case()
A2, cache = forward_propagation(X_assess, parameters)
# Note: we use the mean here just to make sure that your output matches ours.
print(np.mean(cache['Z1']), np.mean(cache['A1']), np.mean(cache['Z2']), np.mean(cache['A2']))
# GRADED FUNCTION: compute_cost
def compute_cost(A2, Y, parameters):
"""
Computes the cross-entropy cost given in equation (13)
Arguments:
A2 -- The sigmoid output of the second activation, of shape (1, number of examples)
Y -- "true" labels vector of shape (1, number of examples)
parameters -- python dictionary containing your parameters W1, b1, W2 and b2
[Note that the parameters argument is not used in this function,
but the auto-grader currently expects this parameter.
Future version of this notebook will fix both the notebook
and the auto-grader so that `parameters` is not needed.
For now, please include `parameters` in the function signature,
and also when invoking this function.]
Returns:
cost -- cross-entropy cost given equation (13)
"""
m = Y.shape[1] # number of example
# Compute the cross-entropy cost
### START CODE HERE ### (≈ 2 lines of code)
logprobs = np.multiply(np.log(A2), Y)
cost = - np.sum(logprobs)
# cost = np.dot(np.log(A2), Y.T)
### END CODE HERE ###
cost = float(np.squeeze(cost)) # makes sure cost is the dimension we expect.
# E.g., turns [[17]] into 17
assert (isinstance(cost, float))
return cost
A2, Y_assess, parameters = compute_cost_test_case()
print("cost = " + str(compute_cost(A2, Y_assess, parameters)))
# GRADED FUNCTION: backward_propagation
def backward_propagation(parameters, cache, X, Y):
"""
Implement the backward propagation using the instructions above.
Arguments:
parameters -- python dictionary containing our parameters
cache -- a dictionary containing "Z1", "A1", "Z2" and "A2".
X -- input data of shape (2, number of examples)
Y -- "true" labels vector of shape (1, number of examples)
Returns:
grads -- python dictionary containing your gradients with respect to different parameters
"""
m = X.shape[1]
# First, retrieve W1 and W2 from the dictionary "parameters".
### START CODE HERE ### (≈ 2 lines of code)
W1 = parameters["W1"]
W2 = parameters["W2"]
### END CODE HERE ###
# Retrieve also A1 and A2 from dictionary "cache".
### START CODE HERE ### (≈ 2 lines of code)
A1 = cache["A1"]
A2 = cache["A2"]
### END CODE HERE ###
# Backward propagation: calculate dW1, db1, dW2, db2.
### START CODE HERE ### (≈ 6 lines of code, corresponding to 6 equations on slide above)
dZ2 = A2 - Y
dW2 = np.dot(dZ2, A1.T) / m
db2 = np.sum(dZ2, axis=1, keepdims=True) / m
dZ1 = np.dot(W2.T, dZ2) * (1 - np.power(A1, 2))
dW1 = np.dot(dZ1, X.T) / m
db1 = np.sum(dZ1, axis=1, keepdims=True) / m
### END CODE HERE ###
grads = {"dW1": dW1,
"db1": db1,
"dW2": dW2,
"db2": db2}
return grads
parameters, cache, X_assess, Y_assess = backward_propagation_test_case()
grads = backward_propagation(parameters, cache, X_assess, Y_assess)
print("dW1 = " + str(grads["dW1"]))
print("db1 = " + str(grads["db1"]))
print("dW2 = " + str(grads["dW2"]))
print("db2 = " + str(grads["db2"]))
# GRADED FUNCTION: update_parameters
def update_parameters(parameters, grads, learning_rate=1.2):
"""
Updates parameters using the gradient descent update rule given above
Arguments:
parameters -- python dictionary containing your parameters
grads -- python dictionary containing your gradients
Returns:
parameters -- python dictionary containing your updated parameters
"""
# Retrieve each parameter from the dictionary "parameters"
### START CODE HERE ### (≈ 4 lines of code)
W1 = parameters["W1"]
b1 = parameters["b1"]
W2 = parameters["W2"]
b2 = parameters["b2"]
### END CODE HERE ###
# Retrieve each gradient from the dictionary "grads"
### START CODE HERE ### (≈ 4 lines of code)
dW1 = grads["dW1"]
db1 = grads["db1"]
dW2 = grads["dW2"]
db2 = grads["db2"]
## END CODE HERE ###
# Update rule for each parameter
### START CODE HERE ### (≈ 4 lines of code)
W1 = W1 - learning_rate * dW1
b1 = b1 - learning_rate * db1
W2 = W2 - learning_rate * dW2
b2 = b2 - learning_rate * db2
### END CODE HERE ###
parameters = {"W1": W1,
"b1": b1,
"W2": W2,
"b2": b2}
return parameters
parameters, grads = update_parameters_test_case()
parameters = update_parameters(parameters, grads)
print("W1 = " + str(parameters["W1"]))
print("b1 = " + str(parameters["b1"]))
print("W2 = " + str(parameters["W2"]))
print("b2 = " + str(parameters["b2"]))
# GRADED FUNCTION: nn_model
def nn_model(X, Y, n_h, num_iterations=10000, print_cost=False):
"""
Arguments:
X -- dataset of shape (2, number of examples)
Y -- labels of shape (1, number of examples)
n_h -- size of the hidden layer
num_iterations -- Number of iterations in gradient descent loop
print_cost -- if True, print the cost every 1000 iterations
Returns:
parameters -- parameters learnt by the model. They can then be used to predict.
"""
np.random.seed(3)
n_x = layer_sizes(X, Y)[0]
n_y = layer_sizes(X, Y)[2]
# Initialize parameters
### START CODE HERE ### (≈ 1 line of code)
parameters = initialize_parameters(n_x, n_h, n_y)
### END CODE HERE ###
# Loop (gradient descent)
for i in range(0, num_iterations):
### START CODE HERE ### (≈ 4 lines of code)
# Forward propagation. Inputs: "X, parameters". Outputs: "A2, cache".
A2, cache = forward_propagation(X, parameters)
# Cost function. Inputs: "A2, Y, parameters". Outputs: "cost".
cost = compute_cost(A2, Y, parameters)
# Backpropagation. Inputs: "parameters, cache, X, Y". Outputs: "grads".
grads = backward_propagation(parameters, cache, X, Y)
# Gradient descent parameter update. Inputs: "parameters, grads". Outputs: "parameters".
parameters = update_parameters(parameters, grads)
### END CODE HERE ###
# Print the cost every 1000 iterations
if print_cost and i % 1000 == 0:
print("Cost after iteration %i: %f" % (i, cost))
return parameters
X_assess, Y_assess = nn_model_test_case()
parameters = nn_model(X_assess, Y_assess, 4, num_iterations=10000, print_cost=True)
print("W1 = " + str(parameters["W1"]))
print("b1 = " + str(parameters["b1"]))
print("W2 = " + str(parameters["W2"]))
print("b2 = " + str(parameters["b2"]))
# GRADED FUNCTION: predict
def predict(parameters, X):
"""
Using the learned parameters, predicts a class for each example in X
Arguments:
parameters -- python dictionary containing your parameters
X -- input data of size (n_x, m)
Returns
predictions -- vector of predictions of our model (red: 0 / blue: 1)
"""
# Computes probabilities using forward propagation, and classifies to 0/1 using 0.5 as the threshold.
### START CODE HERE ### (≈ 2 lines of code)
A2, cache = forward_propagation(X, parameters)
predictions = np.array([(pred > 0.5) for pred in A2])
### END CODE HERE ###
return predictions
parameters, X_assess = predict_test_case()
predictions = predict(parameters, X_assess)
print("predictions mean = " + str(np.mean(predictions)))
# Build a model with a n_h-dimensional hidden layer
parameters = nn_model(X, Y, n_h=4, num_iterations=10000, print_cost=True)
# Plot the decision boundary
plot_decision_boundary(lambda x: predict(parameters, x.T), X, Y)
plt.title("Decision Boundary for hidden layer size " + str(4))
# Print accuracy
predictions = predict(parameters, X)
print('Accuracy: %d' % float((np.dot(Y, predictions.T) + np.dot(1 - Y, 1 - predictions.T)) / float(Y.size) * 100) + '%')
# This may take about 2 minutes to run
plt.figure(figsize=(16, 32))
hidden_layer_sizes = [1, 2, 3, 4, 5, 20, 50]
for i, n_h in enumerate(hidden_layer_sizes):
plt.subplot(5, 2, i + 1)
plt.title('Hidden Layer of size %d' % n_h)
parameters = nn_model(X, Y, n_h, num_iterations=5000)
plot_decision_boundary(lambda x: predict(parameters, x.T), X, Y, 0)
predictions = predict(parameters, X)
accuracy = float((np.dot(Y, predictions.T) + np.dot(1 - Y, 1 - predictions.T)) / float(Y.size) * 100)
print("Accuracy for {} hidden units: {} %".format(n_h, accuracy))
plt.show()