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pipelinev3.py
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pipelinev3.py
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"""Written by ravioli1369@gmail.com"""
"""----------------------------------------------------------------------------------------------------------------"""
import subprocess as sp
import glob
import argparse
"""-----Automatic Pipeline-----------------------------------------------------------------------------------------"""
"""-----functions for automatic pipeline---------------------------------------------------------------------------"""
# cztgtigen
def gtigen(evt, mkf, mkf_threshold):
sp.call(
[
"cztgtigen",
"eventfile=" + evt,
"mkffile=" + mkf,
"thresholdfile=" + mkf_threshold,
"outfile=" + evt.replace(".evt", ".gti"),
"usergtifile=-",
"clobber=YES",
"history=YES",
]
)
# cztgaas
def gaas(evt, mkf):
sp.call(
[
"cztgaas",
"par_evtfile=" + evt,
"par_mkffile=" + mkf,
"par_outAspectfile=" + evt.replace("_bc.evt", ".aspect"),
"par_clobber=YES",
"par_history=YES",
]
)
# cztdatasel
def datasel(evt):
sp.call(
[
"cztdatasel",
"infile=" + evt,
"gtitype=QUAD",
"gtifile=" + evt.replace(".evt", ".gti"),
"outfile=" + evt.replace("bc.evt", "bc_ds.evt"),
"clobber=YES",
"history=YES",
]
)
# cztpixclean
def pixclean(evt, livetime):
sp.call(
[
"cztpixclean",
"infile=" + evt.replace("bc.evt", "bc_ds.evt"),
"inlivetimefile=" + livetime,
"outfile1=" + evt.replace("bc.evt", "quad_pc.evt"),
"outlivetimefile=" + evt.replace("bc.evt", "quad_livetime.fits"),
"badpixfile=" + evt.replace("bc.evt", "quad_badpix.fits"),
"det_tbinsize=1",
"pix_tbinsize=1",
"det_count_thresh=100",
"pix_count_thresh=1000",
]
)
# cztevtclean
def evtclean(evt):
sp.call(
[
"cztevtclean",
"infile=" + evt.replace("bc.evt", "quad_pc.evt"),
"outfile=" + evt.replace("bc.evt", "quad_clean.evt"),
"alphaval=" + "0",
"vetorange=" + "0-0",
"clobber=YES",
"history=YES",
]
)
# cztflagbadpix
def flagbadpix(evt):
sp.call(
[
"cztflagbadpix",
"nbadpixFiles=1",
"badpixfile=" + evt.replace("bc.evt", "quad_badpix.fits"),
"outfile=" + evt.replace("bc.evt", "quad_badpix_out.fits"),
"clobber=YES",
"history=YES",
]
)
# cztbindata
def bindata(evt, mkf, timebinsize, emin, emax):
sp.call(
[
"cztbindata",
"inevtfile=" + evt.replace("bc.evt", "quad_clean.evt"),
"mkffile=" + mkf,
"badpixfile=" + evt.replace("bc.evt", "quad_badpix_out.fits"),
"badpixthreshold=0",
"livetimefile=" + evt.replace("bc.evt", "quad_livetime.fits"),
"outputtype=lc",
"emin=" + str(emin),
"emax=" + str(emax),
"timebinsize=" + str(timebinsize),
"outfile=" + evt.replace("bc.evt", "quad_clean"),
"outevtfile=" + evt.replace("bc.evt", "quad_clean_weight.evt"),
"maskWeight=n",
"rasrc=0",
"decsrc=0",
"clobber=YES",
"history=YES",
]
)
# cztdpigen
def dpigen(evt):
sp.call(
[
"cztdpigen",
"par_infile=" + evt.replace("bc.evt", "quad_clean.evt"),
"par_badpixFile=" + evt.replace("bc.evt", "quad_badpix_out.fits"),
"par_badpixThreshold=0",
"par_outDPHfile=" + evt.replace("bc.evt", "quad_clean.dpi"),
"par_outDPIfile=" + evt.replace("bc.evt", "quad_clean.dph"),
"par_quadsToProcess=0,1,2,3",
"par_timerange=-",
"par_ebins=-",
"par_clobber=YES",
"par_history=YES",
]
)
# cztimage
def image(evt):
sp.call(
[
"cztimage",
"par_intype=dpi",
"par_infile=" + evt.replace("bc.evt", "quad_clean.dpi"),
"par_aspectfileQ0=" + evt.replace("_bc.evt", ".aspect") + "_Q0",
"par_aspectfileQ1=" + evt.replace("_bc.evt", ".aspect") + "_Q1",
"par_aspectfileQ2=" + evt.replace("_bc.evt", ".aspect") + "_Q2",
"par_aspectfileQ3=" + evt.replace("_bc.evt", ".aspect") + "_Q3",
"par_outImgFile=" + evt.replace("bc.evt", "quad_clean.img"),
"par_quadsToProcess=0,1,2,3",
"par_clobber=YES",
"par_history=YES",
]
)
# cztrspgen
def rspgen(evt):
quad_clean = evt.replace("bc.evt", "quad_clean")
quad_cleanevt = evt.replace("bc.evt", "quad_clean.evt")
quad_badpix_outfits = evt.replace("bc.evt", "quad_badpix_out.fits")
Q0pha = quad_clean + "_Q0.pha"
Q1pha = quad_clean + "_Q1.pha"
Q2pha = quad_clean + "_Q2.pha"
Q3pha = quad_clean + "_Q3.pha"
Q0rsp = quad_clean + "_Q0.rsp"
Q1rsp = quad_clean + "_Q1.rsp"
Q2rsp = quad_clean + "_Q2.rsp"
Q3rsp = quad_clean + "_Q3.rsp"
sp.call(
[
"cztrspgen",
"phafile=" + Q0pha,
"rspfile=" + Q0rsp,
"evtfile=" + quad_cleanevt,
"badpixfile=" + quad_badpix_outfits,
"clobber=YES",
"history=YES",
]
)
sp.call(
[
"cztrspgen",
"phafile=" + Q1pha,
"rspfile=" + Q1rsp,
"evtfile=" + quad_cleanevt,
"badpixfile=" + quad_badpix_outfits,
"clobber=YES",
"history=YES",
]
)
sp.call(
[
"cztrspgen",
"phafile=" + Q2pha,
"rspfile=" + Q2rsp,
"evtfile=" + quad_cleanevt,
"badpixfile=" + quad_badpix_outfits,
"clobber=YES",
"history=YES",
]
)
sp.call(
[
"cztrspgen",
"phafile=" + Q3pha,
"rspfile=" + Q3rsp,
"evtfile=" + quad_cleanevt,
"badpixfile=" + quad_badpix_outfits,
"clobber=YES",
"history=YES",
]
)
if __name__ == "__main__":
parser = argparse.ArgumentParser(
description="CZTI Pipeline",
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
)
parser.add_argument("-d", help="Input directory", type=str, default="")
parser.add_argument("-e", help="Input event file", type=str, default="")
parser.add_argument("-m", help="Input mkf file", type=str, default="")
parser.add_argument("-t", help="Input mkf threshold", type=str, default="")
parser.add_argument("-l", help="Input livetime file", type=str, default="")
parser.add_argument("-time", help="Input timebinsize", type=float, default=1)
parser.add_argument("-emin", help="Energy lower limit", type=float, default=20)
parser.add_argument("-emax", help="Energy upper limit", type=float, default=200)
"""-------------variable creation-----------------------------------------------------------------------------------"""
args = parser.parse_args()
if args.d == "":
evt = args.e
mkf = args.m
mkf_threshold = args.t
livetime = args.l
else:
evt = glob.glob(f"{args.d}/*bc.evt")[0]
mkf = glob.glob(f"{args.d}/*.mkf")[0]
mkf_threshold = glob.glob(f"{args.d}/*.txt")[0]
livetime = glob.glob(f"{args.d}/*bc_livetime.fits")[0]
emin = args.emin
emax = args.emax
timebinsize = args.time
print(evt, mkf, mkf_threshold, livetime, timebinsize)
"""-------------calling functions-----------------------------------------------------------------------------------"""
gtigen(evt, mkf, mkf_threshold)
datasel(evt)
pixclean(evt, livetime)
evtclean(evt)
flagbadpix(evt)
bindata(evt, mkf, timebinsize, emin, emax)