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CHANGELOG.md

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Changelog

0.9.3 (2024-03-04)

Build

  • docker: install correct extras of reana-commons submodule (#79) (fd9b88a)
  • docker: non-editable submodules in "latest" mode (#73) (c3595c2)
  • python: bump all required packages as of 2024-03-04 (#85) (66e81e2)
  • python: bump shared REANA packages as of 2024-03-04 (#85) (d07f91f)

Features

  • config: get max number of parallel jobs from env vars (#84) (69cfad4)
  • executor: upgrade to Snakemake v7.32.4 (#81) (4a3f359)

Bug fixes

Code refactoring

  • docs: move from reST to Markdown (#82) (31de94f)

Continuous integration

  • commitlint: addition of commit message linter (#74) (145b7e7)
  • commitlint: allow release commit style (#86) (fd032db)
  • commitlint: check for the presence of concrete PR number (#80) (b677913)
  • release-please: initial configuration (#74) (9b16bd0)
  • release-please: update version in Dockerfile (#77) (3c35a67)
  • shellcheck: fix exit code propagation (#80) (ad15c0d)

Documentation

  • authors: complete list of contributors (#83) (4782678)

0.9.2 (2023-12-12)

  • Adds automated container image building for amd64 architecture.
  • Adds metadata labels to Dockerfile.
  • Fixes creation of image thumbnails for output files in Snakemake HTML execution reports.
  • Fixes container image building on the arm64 architecture.

0.9.1 (2023-09-27)

  • Changes remote storage file support to use XRootD 5.6.0.
  • Fixes the reported total number of jobs for restarted workflows by excluding cached jobs that were simply reused from previous runs in the workspace and not really executed by Snakemake.
  • Fixes an issue where workflows could get stuck waiting for already-finished jobs.
  • Fixes container image names to be Podman-compatible.

0.9.0 (2023-01-19)

  • Adds support for specifying slurm_partition and slurm_time for Slurm compute backend jobs.
  • Adds support for XRootD remote file locations in workflow specification definitions.
  • Adds support for Kerberos authentication for workflow orchestration.
  • Adds support for Rucio authentication for workflow jobs.
  • Changes global setting of maximum number of parallel jobs to 300.
  • Changes the base image of the component to Ubuntu 20.04 LTS and reduces final Docker image size by removing build-time dependencies.
  • Fixes progress reporting for failed workflow jobs.

0.8.1 (2022-02-07)

  • Adds support for specifying kubernetes_job_timeout for Kubernetes compute backend jobs.
  • Adds polling job-controller to determine job statuses instead of checking files.

0.8.0 (2021-11-22)

  • Adds initial REANA Snakemake executor implementation.
  • Adds support for snakemake reports generation.
  • Adds support for REANA custom resources.
  • Adds support for parallel job execution.