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limitations ? #20

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lmanchon opened this issue Aug 29, 2022 · 1 comment
Open

limitations ? #20

lmanchon opened this issue Aug 29, 2022 · 1 comment
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@agudys

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@lmanchon
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--Hi,
program failed with a list of 200000 entries

kmer-db build -k 21 -multisample-fasta input.list DGV-kmer-21.db
Kmer-db version 1.10.0 (18.07.2022)
S. Deorowicz, A. Gudys, M. Dlugosz, M. Kokot, and A. Danek (c) 2018

Analysis started at Mon Aug 29 14:46:33 2022

Database building mode (from fasta genomes)
Processing samples...
60...

seems to be frozen...
(with 16 cores and 80GB of RAM)
@agudys
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agudys commented Mar 8, 2023

@lmanchon
Sorry it took us so long. In the latest release (1.11.1) the deadlock in the -multisample-fasta mode you had reported have been removed.

@agudys agudys self-assigned this Mar 8, 2023
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@lmanchon @agudys