option to include non-canonical k-mers

[haneubau]

Hi,
I was wondering if it is possible to include an argument in kmer-db that allows the inclusion of non-canonical k-mers in the construction and querying of databases. Thus far I have been using a modified version that only uses non-canonical k-mers by simply changing this line:

kmer-db/src/kmer_extract.h

Line 87 in 04f2dd4

kmer_can = (kmer_str < kmer_rev) ? kmer_str : kmer_rev;

to kmer_can = kmer_str;
Also, thanks for creating kmer-db, it's been quite useful!

best,
Hannes

[agudys]

Dear Hannes!

Sorry for the delay. We are planning to publish new Kmer-db release in the next few weeks. We will include an option for inclusion of non canonical k-mers.

Best,
Adam