there are no some functions

[NAGUIBATEUR228]

i have installed the package with
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("biomaRt")

and then tried
is.genome.available(db = "refseq", organism = "Homo sapiens")

as in the example
but R 4.4.1 could not find such function

the same:
getGenome( db = "refseq",

•        organism = "Homo sapiens",
  

•        path     = file.path("_ncbi_downloads","genomes") )
  

Error in getGenome(db = "refseq", organism = "Homo sapiens", path = file.path("_ncbi_downloads", :
can not find function "getGenome"

[HajkD]

Hi,

The name of this package is biomartr and not BiocManager::install("biomaRt").

So installation should be done with:

# install developer version
BiocManager::install("ropensci/biomartr")

I hope this helps!

[NAGUIBATEUR228]

thaks for your response! i have found out it late, sorry. Le mer. 10 juil. 2024 à 23:45, Hajk-Georg Drost ***@***.***> a écrit :

…

Hi, The name of this package is biomartr and not BiocManager::install("biomaRt"). So installation should be done with: # install developer versionBiocManager::install("ropensci/biomartr") I hope this helps! — Reply to this email directly, view it on GitHub <#114 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/A7V4ANXMHVAAOWG6ZBTHCU3ZLWMPHAVCNFSM6AAAAABKVOJ6W2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDEMRRGQYTSNRSGE> . You are receiving this because you authored the thread.Message ID: ***@***.***>