Releases: ropensci/jstor
jstor 0.3.8
- The package homepage has switched from https://ropensci.github.io/jstor to
https://docs.ropensci.org/jstor. This simplifies building the site and aligns it
with the rest of rOpenSci's packages. #80 - Compatibility fix for tibble 3.0.0.
jstor 0.3.7
This is a small release to fix compatibility with tidyr v1.0.0
. Furthermore,
the formerly defunct functions following the old naming conventions (like
find_article()
, find_references()
, etc.) have been removed.
jstor 0.3.6
This is another small release to fix compatibility with readr v1.3.0
and
tibble v2.0.0
. There are no other changes.
jstor 0.3.5
This is a small release, mainly to fix compatibility with version 1.2.0
of
readr
. There is one breaking change however:
Breaking changes
- Output column names for
jst_get_refernces
have been renamed to avoid
ambiguity when matching with output fromjst_get_article
. All columns now have
aref_*
prefix.
jstor 0.3.4
- Added option to parse references, if the information is available. #32
- Output from error messages is "re-imported" properly as well.
- Example files have been renamed for clarity.
sample_
has been replaced with
article_
or removed altogether. - Reworked internals for catching misspecifications in
jst_define_import
due
to upcoming release ofrlang v0.3.0
.
jstor 0.3.3
Removed functionality
- The option to download the most recent data on journals directly from JSTOR
(as injst_get_journal_overview(most_recent = T)
)
had to be removed due changes on their server. I will try to find a solution
with JSTOR support so we can add the functionality again.
New features
jst_define_import
now prints the specification in a pretty and informative
way.jst_define_import
now checks the definition more extensively:
jst_define_import(article = jst_get_book)
or similar mis-specifications
will raise an error.- Import the crayon package for more colourful error messages in some places,
which are easier to read.
Bug fixes
- Removed an outdated function from the vignette on batch importing files.
Other changes
- The old group of
find_*
functions is now defunct (they raise an error). - Updated cached version of journal data.
jstor 0.3.2
This is a hotfix to resolve an issue with writing to other directories than temporary folders during tests, which should not have happend in the first place.
jstor 0.3.1
jstor 0.3.1
jstor
is now part of rOpenSci.- removed arguments
new_col
forjst_unify_journal_id
and
jst_add_total_pages
, since both built on the dev version of rlang. Once this
version is on CRAN, they will be re-introduced. - fixed a few issues in README and man files regarding changes introduced with
0.3.0.
jstor 0.3.0
Breaking changes
jst_import
and jst_import_zip
now use futures as a backend for parallel
processing. This makes internals more compact and reduces dependencies.
Furthermore this reduces the number of arguments, since the argument cores
has been removed. By default, the functions run sequentially. If you want them
to execute in parallel, use futures:
library(future)
plan(multiprocess)
jst_import_zip("zip-archive.zip",
import_spec = jst_define_import(article = jst_get_article),
out_file = "outfile")
If you want to terminate the proceses, at least on *nix-systems you need to kill
them manually (once again).
- All functions have been renamed to use a unified naming scheme:
jst_*
.
The former group offind_*
functions is now calledjst_get_*
, as in
jst_get_article()
. The previous functions have been deprecated and will be
removed before submission to CRAN. - The unique identifier for matching across files has been renamed to
file_name
, and the corresponding helper to get this file name from
get_basename
tojst_get_file_name
.
Importing data directly from zip-files
There is a new set of functions which lets you directly import files from
.zip-archives: jst_import_zip()
and jst_define_import()
.
In the following example, we have a zip-archive from DfR and want to import
metadata on books and articles. For all articles we want to apply
jst_get_article()
and jst_get_authors()
, for books only jst_get_book()
,
and we want to read unigrams (ngram1).
First we specify what we want, and then we apply it to our zip-archive:
# specify definition
import_spec <- jst_define_import(article = c(jst_get_article, jst_get_authors),
book = jst_get_book,
ngram1 = jst_get_ngram)
# apply definition to archive
jst_import_zip("zip_archive.zip",
import_spec = import_spec,
out_file = "out_path")
If the archive contains also research reports, pamphlets or other ngrams, they
will not be imported. We could however change our specification, if we wanted
to import all kinds of ngrams (given that we originally requested them from
DfR):
# import multiple forms of ngrams
import_spec <- jst_define_import(article = c(jst_get_article, jst_get_authors),
book = jst_get_book,
ngram1 = jst_get_ngram,
ngram2 = jst_get_ngram,
ngram3 = jst_get_ngram)
Note however that for larger archives, importing all ngrams takes a very long
time. It is thus advisable to only import ngrams for articles which you
want to analyse, i.e. most likely a subset of the initial request. The new
function jst_subset_ngrams()
helps you with this (see also the section on
importing bigrams in the
case study.
Before importing all files from a zip-archive, you can get a quick overview with
jst_preview_zip()
.
New vignette
The new vignette("known-quirks")
lists common problems with data from
JSTOR/DfR. Contributions with further cases are welcome!
New functions
- New function
jst_get_journal_overview()
supplies a tibble with contextual
information about the journals in JSTOR. - New function
jst_combine_outputs()
appliesjst_re_import()
to a whole
directory and lets you combine all related files in one go. It uses the file
structure thatjst_import()
andjst_import_zip()
provide as a heuristic: a
filename with a dash and one or multiple digits at its end (filename-1.csv
).
All files
with identical names (disregarding dash and digits) are combined into one file. - New function
jst_re_import()
lets you re_import a.csv
file that
jstor_import()
orjst_import_zip()
had exported. It tries to guess the type
of
content based on the column names or, if column names are not available, from
the number of columns, raising a warning if guessing fails and reverting to a
generic import. - A new function
jst_subset_ngrams()
lets you create a subset of ngram files
within a zip-file which you can import withjst_get_ngram()
. - A new set of convenience functions for taking a few cleaning steps:
jst_clean_page()
tries to turn a character vector with pages into a numeric
one,jst_unify_journal_id()
merges different specifications of journals into
one,jst_add_total_pages()
adds a total count of pages per article, and
jst_augment()
calls all three functions to clean the data set in one go.
Minor changes
- Improved documentation regarding endnotes (thanks @elinw)
- jst_import and jst_import_zip have a new argument:
n_batches
which lets you
specify the number of batches directly
jstor 0.2.6
- added lengthy case study at https://tklebel.github.io/jstor/articles/analysing-n-grams.html
- added a pkgdown site at https://tklebel.github.io/jstor/
- changed implementation of parallel execution in
jstor_import
from
parallel::mclapply
toforeach::foreach
withsnow
as a backend for
%dopar%
. - added support for progress bars #34
jstor_import
now writes column names by default #29- new helper
get_basename
helps to get the basename of a file without its
extension find_article
does not coerce days and months to integer any more, since there
might be information stored as text.- Added a
NEWS.md
file to track changes to the package.