- Commented out dependencies on
taxize
package. Taxonomic rectification no longer works. It will be reinstated if taxize becomes available on CRAN.
- Moved
taxize
package toSuggests
, as it is now orphaned. studyTaxonList()
allows user to skip taxonomic rectification, which relies on functions fromtaxize
package.studyTaxonList()
automatically skips taxonomic rectification iftaxize
is unavailable.
- Fixed warning in
occCitation()
when getting GBIF citations - Updated date formatting using
format()
instead ofas.character()
- Updated test files to incorporate rgbif 3.8.0 output changes, make more efficient
- In occResults, renamed "Dataset", "DatasetKey", and "DataService" to "datasetName", "datasetKey", "dataService", respectively.
- Made an option for removing package citations
- Added "coordinateUncertaintyInMeters" column in processed occurrence results table.
- Further adjustment in testing to be CRAN-compatible
- Adjustment to testing strategy to comply with CRAN policies.
- Links changed to reflect inclusion on ROpenSci.
- Resubmission after archiving due to dependency archiving.
- Functions that rely on getting data from servers via an internet connection now behave more gracefully and informatively when the server cannot be reached.
- Minor update to fix a server connection timeout error.
- Legends for source waffle plots are now wrapped to enhance readability.
- Now fails more gracefully if servers cannot be reached.
- In gbifRetriever, changed rgbif::name_suggests to rgbif::name_backbone. More robust for our purposes.
- Now fills in "Dataset" column in GBIF search results from GBIF citation information.
- No longer throws out GBIF occurrences with missing day and month information.
- Fixed problem with occCitation that caused an error when dataset keys had no associated BIEN data.
- Internal logic made more robust to various error scenarios.
- Now warns user if no taxonomic matches exist for a given name (but doesn't crash!).
- Taxonomic sources were renamed in the Global Names Resolver.
- sumFig() function is now a
plot
method for objects of classoccCiteData
. map.occCite()
has been renamedoccCiteMap()
to avoid confusion with existing method naming conventions.
- Removed a package dependency that was causing warnings on some systems.
- Adjusted function behaviors to more gracefully handle species with no occurrences returned from a search.
- Updated to meet CRAN reviewer guidelines
- Citations now include packages used.
- Updated to reflect new object structures returned by searches with update
rgbif
, version 3.1. - Examples updated to permit testing when possible.
- Version submitted for evaluation in Ebbe Nielsen Challenge.
- The package now works.