DESCRIPTION

Package: CARNIVAL
Title: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
Version: 2.7.2
Authors@R: c(
    person(given = "Enio",
           family = "Gjerga",
           role = c("aut"),
           email = "enio.gjerga@gmail.com",
           comment = c(ORCID = "0000-0002-3060-5786")),
    person(given = "Panuwat",
           family = "Trairatphisan",
           role = "aut"),
    person(given = "Anika",
           family = "Liu",
           role = "ctb"),
    person(given = "Alberto",
           family = "Valdeolivas",
           role = "ctb"),
    person(given = "Nikolas",
           family = "Peschke",
           role = "ctb"),
    person(given = "Aurelien",
           family = "Dugourd",
           role = "ctb"),
    person(given = "Attila",
           family = "Gabor",
           role = "cre",
           email = "attila.gabor@uni-heidelberg.de"),
    person(given = "Olga",
           family = "Ivanova",
           role = "aut",
           email = "olga.ivanova@bioquant.uni-heidelberg.de")
           )
Description: An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores.
             Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.
URL: https://github.com/saezlab/CARNIVAL
BugReports: https://github.com/saezlab/CARNIVAL/issues
Depends:
    R (>= 4.0)
Imports:
    readr,
    stringr,
    lpSolve,
    igraph,
    dplyr,
    tibble,
    tidyr,
    rjson,
    rmarkdown
biocViews: Transcriptomics, GeneExpression, Network
License: GPL-3
LazyData: true
Encoding: UTF-8
Suggests:
    RefManageR,
    BiocStyle,
    covr,
    knitr,
    testthat (>= 3.0.0),
    sessioninfo
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Config/testthat/edition: 3