diff --git a/binder/environment.yml b/binder/environment.yml deleted file mode 100644 index 34564848f..000000000 --- a/binder/environment.yml +++ /dev/null @@ -1,5 +0,0 @@ -name: beakerx -channels: - - conda-forge -dependencies: - - numpy diff --git a/binder/old/apt.txt b/binder/old/apt.txt deleted file mode 100644 index fe0904692..000000000 --- a/binder/old/apt.txt +++ /dev/null @@ -1,9 +0,0 @@ -htop -vim -curl -wget -zip -lsof -nodejs -maven -openjdk-8-jdk diff --git a/binder/old/postBuild b/binder/old/postBuild deleted file mode 100644 index 75bd4d9da..000000000 --- a/binder/old/postBuild +++ /dev/null @@ -1,23 +0,0 @@ -#!/bin/bash - -############################################################### -# jupyter/jupyterlab extensions/kernels # -############################################################### - -# Beaker installation and extension setup -beakerx install -jupyter labextension install @jupyter-widgets/jupyterlab-manager --no-build -jupyter labextension install beakerx-jupyterlab --no-build - -# Table of contents Jupyter Lab Extension -jupyter labextension install @jupyterlab/toc --no-build - -# Git Jupyter/Lab extension -jupyter labextension install @jupyterlab/git --no-build -jupyter serverextension enable --py jupyterlab_git - -# Github Jupyter Lab extension -jupyter labextension install @jupyterlab/github --no-build - -# Building everything up for jupyterlab extensions -jupyter lab build diff --git a/binder/old/requirements.txt b/binder/old/requirements.txt deleted file mode 100644 index 5e4a6678f..000000000 --- a/binder/old/requirements.txt +++ /dev/null @@ -1,24 +0,0 @@ -# sos - script of scripts (multiple kernels) -sos -sos-notebook - -# beakerx (kernels: java, clojure, groovy, scala, kotlin, sql) and dependencies -beakerx -py4j - -# jupyter/jupyterlab plugins/extensions -jupyterlab -jupyter_contrib_nbextensions -jupyterlab_launcher -jupyterlab-git -ipywidgets - -# data structures and data analysis -pandas -numpy - -# data viz -matplotlib -plotly -chart-studio -seaborn diff --git a/binder/old/start b/binder/old/start deleted file mode 100644 index 7afcde931..000000000 --- a/binder/old/start +++ /dev/null @@ -1,5 +0,0 @@ -#!/bin/bash - -# DO NOT REMOVE(!) -# Here is why: https://mybinder.readthedocs.io/en/latest/config_files.html#start-run-code-before-the-user-sessions-starts -exec "$@" diff --git a/binder/postBuild b/binder/postBuild deleted file mode 100644 index c74305017..000000000 --- a/binder/postBuild +++ /dev/null @@ -1 +0,0 @@ -conda install beakerx \ No newline at end of file diff --git a/binder/requirements.txt b/binder/requirements.txt new file mode 100644 index 000000000..ecb1e4523 --- /dev/null +++ b/binder/requirements.txt @@ -0,0 +1,8 @@ +pandas +matplotlib +scipy +statsmodels +networkx +numpy +gseapy +iplantuml \ No newline at end of file