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Serdar-Balci-MD-Pathologist-CV.Rmd
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Serdar-Balci-MD-Pathologist-CV.Rmd
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---
title: "Serdar Balci, MD, Pathologist, CV"
output:
distill::distill_article:
toc: true
toc_depth: 4
toc_float: true
highlight: haddock
highlight_downlit: false
---
<script async="" charset="utf-8" src="https://badge.dimensions.ai/badge.js"></script>
<script src="https://d1bxh8uas1mnw7.cloudfront.net/assets/embed.js" type="text/javascript"></script>
<div itemscope="" itemtype="https://schema.org/Person">
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "Person",
"name": "Serdar Balcı",
"url": "https://www.serdarbalci.com/",
"jobTitle": "MD, Pathologist",
"sameAs": [
"https://www.facebook.com/serdarbalcimd",
"https://www.facebook.com/serdarbalcimdpathologist/",
"https://www.instagram.com/balciserdar/",
"https://www.linkedin.com/in/serdar-balci-md-pathologist/",
"https://twitter.com/serdarbalci",
"https://github.com/sbalci",
"https://www.parapathology.com",
"https://www.patolojinotlari.com",
"https://www.patolojiai.com/",
"https://www.memorial.com.tr/doktorlar/serdar-balci-k"
]
}
</script></div>
```{r global_options, include=FALSE}
knitr::opts_chunk$set(fig.width = 12, fig.height = 8, fig.path = "Figs/", echo = FALSE, warning = FALSE, message = FALSE, error = FALSE, eval = TRUE, tidy = TRUE, comment = NA, cache = TRUE, R.options = list(width = 60))
```
```{r eval=FALSE, include=FALSE}
gotop::use_gotop(
src = "fas fa-chevron-circle-up", # css class from Font Awesome
color = "tomato", # color
opacity = 0.8, # transparency
width = 30, # size
# appear = 100 # number of pixels before appearance
appear = 0
)
```
## Biyografi
**Serdar Balcı**
*Türk Hekim ve Araştırmacı. Patoloji Uzmanı.*
2005 yılında Hacettepe Üniversitesi Tıp (İng) Fakültesi'nden mezun oldu. Aynı yıl patoloji asistanlığına başladı. 2010 yılında patoloji uzmanı oldu. 2009 ve 2013-2014 arasında ABD'de Emory Üniversitesi'nde pankreatobilier sistem tümörleri üzerinde araştırmalar yaptı. Katıldığı çalışmalar ışığında tümör sınıflama ve kılavuzlarında güncellemeler oldu. 2016 yılında doçent oldu.
İlgi alanları arasında tümör sınıflandırılması, tümör evrelemesi, patolojide kalite kontrol uygulamaları, anatomik patolojide istatistik uygulamaları ve R-project yer almaktadır.
Halen serbest akademik danışman olarak araştırmalarına devam etmektedir.
<aside>
```{r img SerdarBalci-MD-Pathologist.jpg}
knitr::include_graphics("img/SerdarBalci-MD-Pathologist.jpg")
```
</aside>
## Biography
I am a Medical Doctor and Pathologist. I graduated from Hacettepe University Faculty of Medicine, Ankara, Turkey, the top medical institution in Turkey. I completed my pathology residency in the Department of Pathology in Hacettepe and then worked at Emory University, Atlanta, GA, USA as a research scholar, and had the opportunity to participate in numerous studies. Since I have always been interested in research, I took statistics and introductory bioinformatics courses at Hacettepe University Biostatistics Department.
<aside>
```{r img docdrserdarbalcijpg_b2d2.jpg}
knitr::include_graphics("img/docdrserdarbalcijpg_b2d2.jpg")
```
</aside>
I have more than 50 articles published in peer-reviewed journals. I have participated in many international studies. For these studies, I have not only participated as a pathologist but was also actively involved in project planning and I have been the main person responsible for data preparation, data cleaning, data analyses, and reporting. I have experience in bibliography programs and image editing software. I have also used SEER data for cancer research.
I am interested in the application of statistical and bioinformatic methods in anatomic and digital pathology. I am also interested in publication metrics and have done some research on bibliometrics. I am using vosviewer and citespace for side projects, and used PubMed data for bibliography and text mining studies.
I have reviewed research papers as you can see on my Publons profile.
Currently, I am on [the website committee](https://pbpath.org/our-committees/) of Pancreatobiliary Pathology Society and I am actively preparing [the Journal Watch](http://pbpath.org/current-journal-watch/) for this society.
<aside>
<iframe src="https://www.google.com/maps/embed?pb=!1m18!1m12!1m3!1d3008.315122572471!2d28.971432050097803!3d41.062103979193644!2m3!1f0!2f0!3f0!3m2!1i1024!2i768!4f13.1!3m3!1m2!1s0x14cab77500bbab5f%3A0x4e5c9efdf6925c87!2sDo%C3%A7.%20Dr.%20Serdar%20Balc%C4%B1%20Patoloji%20Uzman%C4%B1!5e0!3m2!1sen!2str!4v1646745748883!5m2!1sen!2str" width="600" height="450" style="border:0;" allowfullscreen="" loading="lazy"></iframe>
</aside>
# Genel Uğraşılar {#genel-ugrasilar}
[Genel Uğraşılarım]( # "Eşyanın isimleri bize Dede mirasıdır 2/31")
- Gastrointestinal ve Pankreatobilier Patoloji
- Anatomik patolojide istatistik ve biyoinformatik yöntemlerin uygulanması
- Dijital patoloji
- Patolojide kalite kontrol
# Motto yahut Şiar
- Eşyanın isimleri bize Dede mirasıdır. *(2/31)*
- In God we trust. All others must bring data.
In GOTT vertrauen wir, alle anderen müssen Daten bringen.
- Hakkı hak bilip hakka ittiba, bâtılı bâtıl bilip bâtıldan ictinâb.
- Data driven ethical decision making.
# Güncel Uğraşılar {#guncel-ugrasilar}
- [Patoloji Atlası](https://www.patolojiatlasi.com/)
<aside>
<iframe width='160' height='400' src='https://leanpub.com/patolojiatlasi/embed' frameborder='0' allowtransparency='true'></iframe>
</aside>
- [Bibliographic Çalışmalar](https://sbalci.github.io/pubmed/BibliographicStudies.html)
- [ClinicoPath Jamovi Module](https://sbalci.github.io/ClinicoPathJamoviModule/)
- [Open Knowledge Maps](https://openknowledgemaps.org/news#enthusiasts2020)
<aside>
https://openknowledgemaps.org/news#enthusiasts2020
https://openknowledgemaps.org/community
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">We are happy to announce our 2020 enthusiasts 😃 <br>Please welcome with us: Nancy Kwangwa, Daniel Deogratus, Paloma Marín Arraiza, Hamdan Hidayat & Serdar Balci!<br><br>In light of COVID-19, we extended the program's time frame and added more support for webinars: <a href="https://t.co/111bH4AbRf">https://t.co/111bH4AbRf</a> <a href="https://t.co/dk3e3DcEBJ">pic.twitter.com/dk3e3DcEBJ</a></p>— Open Knowledge Maps (@OK_Maps) <a href="https://twitter.com/OK_Maps/status/1252577217542045696?ref_src=twsrc%5Etfw">April 21, 2020</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
</aside>
# Linkler
- https://www.serdarbalci.com/
- https://www.facebook.com/serdarbalcimd
- https://www.facebook.com/serdarbalcimdpathologist/
- https://www.instagram.com/balciserdar/
- https://www.linkedin.com/in/serdar-balci-md-pathologist/
- https://twitter.com/serdarbalci
- <a rel="me" href="https://mastodon.social/@serdarbalci">Mastodon</a>
- https://github.com/sbalci
- https://www.parapathology.com
- https://www.patolojinotlari.com
- https://www.patolojiai.com/
- https://www.memorial.com.tr/doktorlar/serdar-balci-k
# Eğitim {#education}
| Öğrenim Dönemi| Derece| Üniversite| Öğretim Alanı|
|--:|--:|--:|--:|
| 1998-2005| Lisans| Hacettepe Üniversitesi Tıp (İngilizce) Fakültesi| Tıp Doktorluğu|
| 2005-2010| Tıbbi Patoloji Uzmanı| Hacettepe Üniversitesi Tıp Fakültesi Tıbbi Patoloji Anabilim Dalı| Tıbbi Patoloji Uzmanlığı|
| 2010-2011| Özel Öğrenci| Hacettepe Üniversitesi Sağlık Bilimleri Enstitüsü| Tıp Fakültesi Biyoistatistik Anabilim Dalı|
# Yayınlar {#peer-reviewed-publications}
## Yayın Listeleri {#publication-lists}
- [CV, Özgeçmiş](https://drive.google.com/file/d/0B4x15l9fUIsjMm01UTAyTkJvNm8/)
- [GoogleScholar](http://scholar.google.com/citations?user=q40DcqYAAAAJ)
- [ResearcherID: B-6401-2011](http://www.researcherid.com/rid/B-6401-2011)
- [Publons](https://publons.com/researcher/467202/serdar-balci/)
- [PubMed My Bibliography](http://www.ncbi.nlm.nih.gov/sites/myncbi/collections/public/14I_qdU6Oj6VsIwzi12Lbng/)
<aside>
[PubMed My Bibliography](http://www.ncbi.nlm.nih.gov/sites/myncbi/collections/public/1n_xodb65Uqv226D6zhH5rj/?sort=date&direction=ascending)
[PubMed My Bibliography](https://www.ncbi.nlm.nih.gov/myncbi/serdar.balci.1/bibliography/public/)
</aside>
- [ORCID](http://orcid.org/0000-0002-7852-3851)
<aside>
<a content="https://orcid.org/0000-0002-7852-3851" href="https://orcid.org/0000-0002-7852-3851" itemprop="sameAs" rel="noopener noreferrer" style="vertical-align: top;" target="orcid.widget"><img alt="ORCID iD icon" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" style="margin-right: 0.5em; width: 1em;" />orcid.org/0000-0002-7852-3851</a>
</aside>
- [ResearchGate](https://www.researchgate.net/profile/Serdar_Balci)
<aside>
<a href="https://www.researchgate.net/profile/Serdar_Balci?cp=shp" target="_blank" title="Follow me on ResearchGate"><img alt="Follow me on ResearchGate" src="https://www.researchgate.net/images/public/profile_share_badge.png" /></a>
</aside>
- [Scopus](https://www.scopus.com/authid/detail.uri?authorId=22933834600)
- [Loop](http://loop.frontiersin.org/people/306241/overview)
<!--
- [Microsoft Academic](https://academic.microsoft.com/profile/302g2i05-e15h-492i-ff3f-029i0g14j5j4/serdarbalci/)
<aside>
https://academic.microsoft.com/profile/302g2i05-e15h-492i-ff3f-029i0g14j5j4/SerdarBALCI/publication
</aside>
-->
- [Europe PMC](https://europepmc.org/authors/0000-0002-7852-3851)
- [Semantic Scholar](https://www.semanticscholar.org/author/Serdar-Balci/2755920)
- [Lens Scholar](https://www.lens.org/lens/profile/311391349/scholar)
- [openknowledgemaps](https://openknowledgemaps.org/map/cb13e14ef3ea4038280826bbaf87d9f1&embed=true)
<!-- <iframe width="100%" src="http://visualbib.uniud.it/visualBib2/visualBib.min.html?id=c22cef766037d3a918056157466db2e4&embed=1" frameborder="0" > -->
<!-- </iframe> -->
## Atıflar {#citations}
- [Impact Story](https://impactstory.org/u/0000-0002-7852-3851/)
- [Google Scholar](http://scholar.google.com/citations?user=q40DcqYAAAAJ)
<aside>
```{r google scholar, eval=FALSE, include=FALSE}
# suppressPackageStartupMessages(library(scholar))
# suppressPackageStartupMessages(library(ggplot2))
# cit <- get_citation_history("q40DcqYAAAAJ")
# ggplot(cit, aes(x = year, y = cites)) +
# geom_bar(stat = "identity") +
# theme_bw() +
# xlab("Year of citation") +
# ylab("Google Scholar\n cites") +
# annotate("text", label = format(Sys.time(), "%Y-%m-%d %H:%M:%S %Z"), x = -Inf, y = Inf, vjust = 1.5, hjust = -0.05, size = 3, colour = "gray")
```
</aside>
<!-- <a href="https://scholar.google.com.tr/citations?user=q40DcqYAAAAJ"><img alt="Serdar Balci Google Scholar" border="0" data-original-height="300" data-original-width="800" height="120" src="https://drive.google.com/uc?export=view&id=1hehESwCzi_8cxPTU8HFcomP4xwUyF299" width="320" /></a> -->
- [Publons](https://publons.com/researcher/467202/serdar-balci/)
- [ResearcherID](http://www.researcherid.com/rid/B-6401-2011)
## Uluslararası Yayınlar {#international-publications}
### Araştırma Makaleleri {#research-publications}
- Medullary Carcinoma of the Ampulla Has Distinct Clinicopathologic Characteristics Including Common Association with Microsatellite Instability and PD-L1 Expression. Hum Pathol. 2022 Dec 8:S0046-8177(22)00282-9. doi: 10.1016/j.humpath.2022.12.004. Epub ahead of print. PMID: 36502926.
Xue Y, Balci S, Pehlivanoglu B, Muraki T, Memis B, Saka B, Kim G, Bandopadhyay S, Knight J, El-Rayes B, Kooby D, Maithel SK, Sarmiento J, Basturk O, Reid MD, Adsay V.
- Hepatic Cysts: Reappraisal of the Classification, Terminology, Differential Diagnosis, and Clinicopathologic Characteristics in 258 Cases. Am J Surg Pathol. 2022 Jul 4. doi: 10.1097/PAS.0000000000001930. Epub ahead of print. PMID: 35778790.
Armutlu A, Quigley B, Choi H, Basturk O, Akkas G, Pehlivanoglu B, Memis B, Jang KT, Erkan M, Erkan B, Balci S, Saka B, Bagci P, Farris AB, Kooby DA, Martin D, Kalb B, Maithel SK, Sarmiento J, Reid MD, Adsay NV.
- Infiltration pattern predicts metastasis and progression better than the T-stage and grade in pancreatic neuroendocrine tumors: a proposal for a novel infiltration-based morphologic grading. Mod Pathol. 2022 Jun;35(6):777-785. doi: 10.1038/s41379-021-00995-4. Epub 2021 Dec 30. PMID: 34969955.
Taskin OC, Reid MD, Bagci P, Balci S, Armutlu A, Demirtas D, Pehlivanoglu B, Saka B, Memis B, Bozkurtlar E, Leblebici CB, Birceanu A, Xue Y, Erkan M, Kapran Y, Baygul A, Sokmensuer C, Scarpa A, Luchini C, Basturk O, Adsay V.
- T2 gallbladder cancer shows substantial survival variation between continents and this is not due to histopathologic criteria or pathologic sampling differences.
[Virchows Arch. 2021 Jan 7.](https://link.springer.com/article/10.1007%2Fs00428-020-02968-5)
DeSimone MS, Goodman M, Pehlivanoglu B, Memis B, Balci S, Roa JC, Jang KT, Jang JY, Hong SM, Lee K, Kim H, Choi HJ, Muraki T, Araya JC, Bellolio E, Sarmiento JM, Maithel SK, Losada HF, Basturk O, Reid MD, Koshiol J, Adsay V.
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[doi: 10.1007/s00428-020-02968-5](https://doi.org/10.1007/s00428-020-02968-5)
[PMID: 33411027](https://pubmed.ncbi.nlm.nih.gov/33411027/)
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- Gallbladder polyps: Correlation of size and clinicopathologic characteristics based on updated definitions.
[PLoS One. 2020 Sep 11;15(9):e0237979.](https://dx.plos.org/10.1371/journal.pone.0237979)
Taskin OC, Basturk O, Reid MD, Dursun N, Bagci P, Saka B, <i>Balci S</i>, Memis B, Bellolio E, Araya JC, Roa JC, Tapia O, Losada H, Sarmiento J, Jang KT, Jang JY, Pehlivanoglu B, Erkan M, Adsay V.
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[PMID: 32915805](https://pubmed.ncbi.nlm.nih.gov/32915805/)
[PMCID: PMC7485812](http://www.ncbi.nlm.nih.gov/pmc/articles/pmc7485812/)
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- Frequency and clinicopathologic associations of DNA mismatch repair protein deficiency in ampullary carcinoma: Routine testing is indicated.
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- Intracholecystic tubular non-mucinous neoplasm (ICTN) of the gallbladder: a clinicopathologically distinct, invasion-resistant entity.
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- Follicular Cholecystitis: Reappraisal of Incidence, Definition, and Clinicopathologic Associations in an Analysis of 2550 Cholecystectomies.
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- Non-neoplastic Polyps of the Gallbladder: A Clinicopathologic Analysis of 447 Cases.
Am J Surg Pathol. 2019 Nov 12.
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- Poorly Cohesive (Signet Ring Cell) Carcinoma of the Ampulla of Vater. Int J Surg Pathol. 2019 Oct 15;:1066896919880968.
Tuncel D, Basturk O, Bradley KT, Kim GE, Xue Y, Reid MD, <i>Balci S</i>, Erbarut I, Adsay V.
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doi: 10.1177/1066896919880968
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- Sarcomatoid carcinomas of the gallbladder: clinicopathologic characteristics.
Virchows Arch. 2019 Jun 8
Taskin OC, Akkas G, Memis B, Seven IE, Basturk O, Jang KT, Roa JC, Araya JC, Bellolio E, Losada H, Sarmiento J, <i>Balci S</i>, Pehlivanoglu B, Reid MD, Koshiol J, Adsay V.
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doi: 10.1007/s00428-019-02583-z.
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- <i>Role of calcium-sensing receptor, Galectin-3, Cyclin D1, and Ki-67 immunohistochemistry to favor in the diagnosis of parathyroid carcinoma.</i>
Sungu N, Dogan H, Kilicarslan A, Kilic M, Polat S, Tokac M, Akbaba S, Parlak Omer, <i>Balci S</i>, Ogut B, Cakir B.
<a href="http://www.ijpmonline.org/article.asp?issn=0377-4929;year=2018;volume=61;issue=1;spage=22;epage=26;aulast=Sungu;type=0;aid=IndianJPatholMicrobiol_2018_61_1_22_228201" target="_blank">Indian Journal of Pathology and Microbiology 2018, 61:22-26</a>
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- <i>A FISH assay efficiently screens for BRAF gene rearrangements in pancreatic acinar-type neoplasms.</i>
Wang L, Basturk O, Wang J, Benayed R, Middha S, Zehir A, Linkov I, Rao M, Aryeequaye R, Cao L, Chmielecki J, Ross J, Stephens PJ, Adsay V, Askan G, <i>Balci S</i>, Klimstra DS
<a href="https://www.nature.com/articles/modpathol2017106" target="_blank">Mod Pathol. 2018 Jan;31(1):132-140.</a>
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https://api.semanticscholar.org/10.1038/modpathol.2017.106?include_unknown_references=true)
https://www.connectedpapers.com/main/b082e8216300b4a314d7601697cde755e34b409c/A-FISH-assay-efficiently-screens-for-BRAF-gene-rearrangements-in-pancreatic-acinartype-neoplasms/graph
<a href="http://dx.doi.org/10.1038/modpathol.2017.106" target="_blank">doi: 10.1038/modpathol.2017.106</a>
<a href="https://www.ncbi.nlm.nih.gov/pubmed/28884748" target="_blank">PMID: 28884748</a>
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- <i>Pancreatic intraductal tubulopapillary neoplasm is genetically distinct from intraductal papillary mucinous neoplasm and ductal adenocarcinoma.</i>
Basturk O, Berger MF, Yamaguchi H, Adsay V, Askan G, Bhanot UK, Zehir A, Carneiro F, Hong SM, Zamboni G, Dikoglu E, Jobanputra V, Wrzeszczynski KO, <i>Balci S</i>, Allen P, Ikari N, Takeuchi S, Akagawa H, Kanno A, Shimosegawa T, Morikawa T, Motoi F, Unno M, Higuchi R, Yamamoto M, Shimizu K, Furukawa T, Klimstra DS
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<a href="https://doi.org/10.1038/modpathol.2017.60" target="_blank">doi: 10.1038/modpathol.2017.60</a>
<a href="https://www.ncbi.nlm.nih.gov/pubmed/28776573" target="_blank">PMID: 28776573</a>
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- <i>Immunohistochemical Classification of Ampullary Carcinomas: Critical Reappraisal Fails to Confirm Prognostic Relevance for Recently Proposed Panels, and Highlights MUC5AC as a Strong Prognosticator.</i>
Xue Y, Reid MD, <i>Balci S</i>, Quigley B, Muraki T, Memis B, Xia J, Hacihasanoglu E, Bedolla G, Pehlivanoglu B, Kim GE, Tajiri T, Ohike N, Aneja R, Krasinskas AM, Adsay V
<a href="https://journals.lww.com/ajsp/Abstract/2017/07000/Immunohistochemical_Classification_of_Ampullary.1.aspx" target="_blank">Am J Surg Pathol. 2017 Jul;41(7):865-876.</a>
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<a href="https://doi.org/10.1097/PAS.0000000000000863" target="_blank">doi: 10.1097/PAS.0000000000000863</a>
<a href="https://www.ncbi.nlm.nih.gov/pubmed/28505002" target="_blank">PMID: 28505002</a>
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PMID: 27984235 DOI: 10.1097/PAS.0000000000000782
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- Xue Y, Vanoli A, <i>Balci S</i>, Reid MM, Saka B, Bagci P, Memis B, Choi H, Ohike N, Tajiri T, Muraki T, Quigley B, El-Rayes BF, Shaib W, Kooby D, Sarmiento J, Maithel SK, Knight JH, Goodman M, Krasinskas AM, Adsay V. Non-ampullary-duodenal carcinomas: clinicopathologic analysis of 47 cases and comparison with ampullary and pancreatic adenocarcinomas. Mod Pathol. 2016 Oct 14.
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