Compilation problem with GOTM #103
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We know that compile will fail with newer GOTM.
Calling all developers: if you have done this with newer GOTM please contact me. Thx.
…-Joseph
Y. Joseph Zhang
Web: schism.wiki
Office: 804 684 7466
From: emyrizzi11 ***@***.***>
Sent: Wednesday, May 3, 2023 5:21 AM
To: schism-dev/schism ***@***.***>
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Subject: [schism-dev/schism] Compilation problem with GOTM (Issue #103)
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Hello,
The compilation of the model with only the TVD module goes well and I use a similar Make.defs file to the Make.defs.lnec.ws.gnu one.
When I try to turn on the GOTM module, in addition to the previous TVD, the compilation doesn't happen.
I compiled the github GOTM version and I get the differnt libraries and modules of the closure model. I pass the required paths to the Make.defs.local file and then I try to compile the new SCHISM model with make pschism, after running a make clean.
The compilation seems to go well and it arrives at 100%, but after that I get this message:
/usr/lib64/openmpi/bin/mpif90 -O2 o/svn.LNEC_WS_GNU/schism_version.o o/svn.LNEC_WS_GNU/schism_glbl.o o/svn.LNEC_WS_GNU/schism_msgp.o o/svn.LNEC_WS_GNU/scribe_io.o o/svn.LNEC_WS_GNU/misc_modules.o o/svn.LNEC_WS_GNU/schism_io.o o/svn.LNEC_WS_GNU/schism_driver.o o/svn.LNEC_WS_GNU/gen_modules_clock.o o/svn.LNEC_WS_GNU/grid_subs.o o/svn.LNEC_WS_GNU/hydraulic_structures.o o/svn.LNEC_WS_GNU/schism_init.o o/svn.LNEC_WS_GNU/schism_step.o o/svn.LNEC_WS_GNU/schism_finalize.o o/svn.LNEC_WS_GNU/bktrk_subs.o o/svn.LNEC_WS_GNU/solver_subs.o o/svn.LNEC_WS_GNU/misc_subs.o o/svn.LNEC_WS_GNU/transport_TVD_imp.o o/svn.LNEC_WS_GNU/sflux_9c.o o/svn.LNEC_WS_GNU/lap.o -L./ParMetis-4.0.3 -lparmetis -lmetis -L/usr/lib64 -lnetcdf -lnetcdff -L/fs/scratch/mare_exp/emilia/SCHISM/model/schism/src/GOTM5_git/build2/lib -libturbulence_prod -libutil_prod -J. -I. -o pschism_LNEC_WS_GNU_VL_GOTM
/usr/bin/ld: cannot find -libturbulence_prod
/usr/bin/ld: cannot find -libutil_prod
collect2: error: ld returned 1 exit status
make: *** [Makefile:412: pschism_LNEC_WS_GNU_VL_GOTM] Error 1
I don't really know where SCHISM gets the path /usr/bin/ld for the two libraries, but the path given is not a directory.
Did anyone had a similar problem?
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Hello again, after the previous message I have decided to try compiling SCHISM using an older version of GOTM, particularly the 5.2 version. I managed to compile the older version, but SCHISM will still give me an error at the end of the compiltaion: o/svn.LNEC_WS_GNU/schism_init.o: In function `schism_init': schism_init.F90:(.text+0x2277e): undefined reference to `__mtridiagonal_MOD_init_tridiagonal' /fs/scratch/mare_exp/emilia/SCHISM/model/schism/src/GOTM5.2_andre/build2/gfortran/lib/libturbulence.a(dissipationeq.F90.o): In function `dissipationeq_': dissipationeq.F90:(.text+0x409): undefined reference to `diff_face_' /fs/scratch/mare_exp/emilia/SCHISM/model/schism/src/GOTM5.2_andre/build2/gfortran/lib/libturbulence.a(genericeq.F90.o): In function `genericeq_': genericeq.F90:(.text+0x456): undefined reference to `diff_face_' /fs/scratch/mare_exp/emilia/SCHISM/model/schism/src/GOTM5.2_andre/build2/gfortran/lib/libturbulence.a(kbeq.F90.o): In function `kbeq_': kbeq.F90:(.text+0x1f5): undefined reference to `diff_face_' kbeq.F90:(.text+0x329): undefined reference to `diff_face_' /fs/scratch/mare_exp/emilia/SCHISM/model/schism/src/GOTM5.2_andre/build2/gfortran/lib/libturbulence.a(lengthscaleeq.F90.o): In function `lengthscaleeq_': lengthscaleeq.F90:(.text+0x4c8): undefined reference to `diff_face_' /fs/scratch/mare_exp/emilia/SCHISM/model/schism/src/GOTM5.2_andre/build2/gfortran/lib/libturbulence.a(q2over2eq.F90.o):q2over2eq.F90:(.text+0x3ab): more undefined references to `diff_face_' follow collect2: error: ld returned 1 exit status make: *** [Makefile:412: pschism_LNEC_WS_GNU_VL_GOTM] Error 1_ As fortran compiler I use GFORTRAN. Thanks in advance |
Hello,
The compilation of the model with only the TVD module goes well and I use a similar Make.defs file to the Make.defs.lnec.ws.gnu one.
When I try to turn on the GOTM module, in addition to the previous TVD, the compilation doesn't happen.
I compiled the github GOTM version and I get the differnt libraries and modules of the closure model. I pass the required paths to the Make.defs.local file and then I try to compile the new SCHISM model with make pschism, after running a make clean.
The compilation seems to go well and it arrives at 100%, but after that I get this message:
/usr/lib64/openmpi/bin/mpif90 -O2 o/svn.LNEC_WS_GNU/schism_version.o o/svn.LNEC_WS_GNU/schism_glbl.o o/svn.LNEC_WS_GNU/schism_msgp.o o/svn.LNEC_WS_GNU/scribe_io.o o/svn.LNEC_WS_GNU/misc_modules.o o/svn.LNEC_WS_GNU/schism_io.o o/svn.LNEC_WS_GNU/schism_driver.o o/svn.LNEC_WS_GNU/gen_modules_clock.o o/svn.LNEC_WS_GNU/grid_subs.o o/svn.LNEC_WS_GNU/hydraulic_structures.o o/svn.LNEC_WS_GNU/schism_init.o o/svn.LNEC_WS_GNU/schism_step.o o/svn.LNEC_WS_GNU/schism_finalize.o o/svn.LNEC_WS_GNU/bktrk_subs.o o/svn.LNEC_WS_GNU/solver_subs.o o/svn.LNEC_WS_GNU/misc_subs.o o/svn.LNEC_WS_GNU/transport_TVD_imp.o o/svn.LNEC_WS_GNU/sflux_9c.o o/svn.LNEC_WS_GNU/lap.o -L./ParMetis-4.0.3 -lparmetis -lmetis -L/usr/lib64 -lnetcdf -lnetcdff -L/fs/scratch/mare_exp/emilia/SCHISM/model/schism/src/GOTM5_git/build2/lib -libturbulence_prod -libutil_prod -J. -I. -o pschism_LNEC_WS_GNU_VL_GOTM
/usr/bin/ld: cannot find -libturbulence_prod
/usr/bin/ld: cannot find -libutil_prod
collect2: error: ld returned 1 exit status
make: *** [Makefile:412: pschism_LNEC_WS_GNU_VL_GOTM] Error 1
I don't really know where SCHISM gets the path /usr/bin/ld for the two libraries, but the path given is not a directory.
Did anyone had a similar problem?
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