{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":19716335,"defaultBranch":"master","name":"popcycle","ownerLogin":"seaflow-uw","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-05-12T21:37:26.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/63115585?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1694036317.0","currentOid":""},"activityList":{"items":[{"before":"dc256d625db11caba706f51dc70790036c7d3294","after":"faaf8159a7c10fd62ca7c1a952e6a8f98e02567a","ref":"refs/heads/master","pushedAt":"2024-06-14T18:53:55.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Set consistent pop factor levels in VCT\n\nTo make sure equivalent VCT and derivative dataframes always pass `eqauls` tests, set the levels for every pop factor column the same, as defined by POPNAMES in globals.R.\n\nIf new populations are added to popcycle, this will need to be modified.","shortMessageHtmlLink":"Set consistent pop factor levels in VCT"}},{"before":"1ead77eb929a1b8be032688cacbd4847badcfb9c","after":"dc256d625db11caba706f51dc70790036c7d3294","ref":"refs/heads/master","pushedAt":"2024-05-28T21:20:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Simplify grid.R CLI by removing psd-mode option","shortMessageHtmlLink":"Simplify grid.R CLI by removing psd-mode option"}},{"before":"a33815aa612af0411aac71ca8ba23d22b686bf3f","after":"1ead77eb929a1b8be032688cacbd4847badcfb9c","ref":"refs/heads/master","pushedAt":"2024-05-28T20:02:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Modify gridding\n\n* Specify Qc min val and grid bin width rather than min-max range\n* Output clean stat table as well as stat table\n* No more model output from grid.R CLI script, all output is ready\n for model input, i.e. Qc bins can be sized as int(1/log2(bin_width)).","shortMessageHtmlLink":"Modify gridding"}},{"before":"39bb02486e8cec7f46f7a9101d01b8481d599156","after":"a33815aa612af0411aac71ca8ba23d22b686bf3f","ref":"refs/heads/master","pushedAt":"2024-05-16T20:41:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Combine hourly gridded output files into one file","shortMessageHtmlLink":"Combine hourly gridded output files into one file"}},{"before":"cb794bfe1ab8f3b295a6ae483311cf767d9cd86a","after":"39bb02486e8cec7f46f7a9101d01b8481d599156","ref":"refs/heads/master","pushedAt":"2024-05-16T20:13:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Rework PSD code, rename to grid, clean up docs\n\n* Renamed psd everywhere to some form of \"grid\". PSD now refers\nonly to gridded distribution data for Qc with\nvalues = Qc_sum / µL.\n\n* Revised the command-line script for gridding, now called grid.R.\n\n* Updated package doc files.\n\n* Updated gridding tests.\n\n* Bumped to version 6.0.0 to reflect API breaking changes.","shortMessageHtmlLink":"Rework PSD code, rename to grid, clean up docs"}},{"before":"9031aa7d6b62ed782096b12833e9defa38c57e3e","after":"cb794bfe1ab8f3b295a6ae483311cf767d9cd86a","ref":"refs/heads/master","pushedAt":"2024-03-29T23:39:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"fixed bug in version","shortMessageHtmlLink":"fixed bug in version"}},{"before":"f00587fbd4f30a5f335ad203c4d2104d43191610","after":"9031aa7d6b62ed782096b12833e9defa38c57e3e","ref":"refs/heads/master","pushedAt":"2024-03-29T23:17:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"updated abundance calibration","shortMessageHtmlLink":"updated abundance calibration"}},{"before":"f447b3f76bf95a5c92f6ab3dc633eb17d6db6d52","after":"f00587fbd4f30a5f335ad203c4d2104d43191610","ref":"refs/heads/master","pushedAt":"2024-03-28T22:49:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Bump the version after updating calib","shortMessageHtmlLink":"Bump the version after updating calib"}},{"before":"6f7080ef25ac5416c055fb7fd860ae7d8d4e0621","after":"f447b3f76bf95a5c92f6ab3dc633eb17d6db6d52","ref":"refs/heads/master","pushedAt":"2024-03-15T22:12:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/seaflow-uw/popcycle","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/seaflow-uw/popcycle"}},{"before":"0297b3e51f7061ac22722ed491a5fac55cddaa47","after":"6f7080ef25ac5416c055fb7fd860ae7d8d4e0621","ref":"refs/heads/master","pushedAt":"2024-02-08T00:00:35.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Revert Docker build back to Bioconductor 3.15\n\nMoving to 3.18 caused classification to change in some cruises:\nKiloMoana_1, HOT300, DeepDOM, KM1712","shortMessageHtmlLink":"Revert Docker build back to Bioconductor 3.15"}},{"before":"eb2f994e76947254ba266f9e768cc4dd9b118753","after":"0297b3e51f7061ac22722ed491a5fac55cddaa47","ref":"refs/heads/master","pushedAt":"2024-01-16T20:09:38.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Update setup script and Docker build to support flowCore and add testing","shortMessageHtmlLink":"Update setup script and Docker build to support flowCore and add testing"}},{"before":"28387feda9317b6a908be0fd4fb793bfd1c8df56","after":"eb2f994e76947254ba266f9e768cc4dd9b118753","ref":"refs/heads/master","pushedAt":"2024-01-13T01:29:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Fix bug in realtime abund calc","shortMessageHtmlLink":"Fix bug in realtime abund calc"}},{"before":"0a7076b0df7f68315ee3dbdecbba60d93ea923b8","after":"28387feda9317b6a908be0fd4fb793bfd1c8df56","ref":"refs/heads/master","pushedAt":"2024-01-10T00:29:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Don't discard low quality OPP from realtime\n\nsave_opp_stats() accidentally removed OPP entries without particles in all\nquantiles during realtime filtering. The impact of this bug was minimal\nas we generally don't care about files where OPP are not present in all\nquantiles. However, it is still useful during realtime to observe these\nfiles, and this fix makes sure these entries stay in the database.","shortMessageHtmlLink":"Don't discard low quality OPP from realtime"}},{"before":"eee2cc901a69467f7eef189ae7829ae01858f309","after":"0a7076b0df7f68315ee3dbdecbba60d93ea923b8","ref":"refs/heads/master","pushedAt":"2023-12-08T17:57:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"fix error for dataset for which all data have been flagged as low quality data.","shortMessageHtmlLink":"fix error for dataset for which all data have been flagged as low qua…"}},{"before":"04c3f78b70fa62ea5b004083f9137f1fc3f6e524","after":"eee2cc901a69467f7eef189ae7829ae01858f309","ref":"refs/heads/master","pushedAt":"2023-12-08T00:44:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"fixed cruisename","shortMessageHtmlLink":"fixed cruisename"}},{"before":"c1cc9ab6bc2cdab41cce2f7f722a30253d8593a5","after":"04c3f78b70fa62ea5b004083f9137f1fc3f6e524","ref":"refs/heads/master","pushedAt":"2023-12-08T00:31:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"added latest cruises","shortMessageHtmlLink":"added latest cruises"}},{"before":"822e45e404dab202d0093f89c001c9063b71c480","after":"c1cc9ab6bc2cdab41cce2f7f722a30253d8593a5","ref":"refs/heads/master","pushedAt":"2023-11-17T20:46:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"added Refractive Index and Par calibration for latest cruises","shortMessageHtmlLink":"added Refractive Index and Par calibration for latest cruises"}},{"before":"17834851579b7cdd4ab5967bf71cc1169e8b1c22","after":"822e45e404dab202d0093f89c001c9063b71c480","ref":"refs/heads/master","pushedAt":"2023-11-10T02:32:19.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Tweak filtering, prevent reading file twice sometimes, fix msg typo","shortMessageHtmlLink":"Tweak filtering, prevent reading file twice sometimes, fix msg typo"}},{"before":"d95c2c97916721c6c3dd5f6fffa4de0d46317446","after":"17834851579b7cdd4ab5967bf71cc1169e8b1c22","ref":"refs/heads/master","pushedAt":"2023-09-06T21:38:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Bump version to 4.18.0","shortMessageHtmlLink":"Bump version to 4.18.0"}},{"before":"ef4dc375fed088f5bf14f81b101efbd2c760edf8","after":"d95c2c97916721c6c3dd5f6fffa4de0d46317446","ref":"refs/heads/master","pushedAt":"2023-09-06T21:34:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctberthiaume","name":"Chris Berthiaume","path":"/ctberthiaume","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/446244?s=80&v=4"},"commit":{"message":"Edits for realtime, making how we treat volume consistent","shortMessageHtmlLink":"Edits for realtime, making how we treat volume consistent"}},{"before":"33a99e8824cbc92c2cba103bd3e56b8ca5078f2d","after":"ef4dc375fed088f5bf14f81b101efbd2c760edf8","ref":"refs/heads/master","pushedAt":"2023-09-06T21:18:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"added calibration for TN412 and TN413","shortMessageHtmlLink":"added calibration for TN412 and TN413"}},{"before":"23758d4475ebeffa9b84ce2a3f736a01116aea5e","after":"33a99e8824cbc92c2cba103bd3e56b8ca5078f2d","ref":"refs/heads/master","pushedAt":"2023-09-05T21:58:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"Warning: FAKE 130 settings using 740","shortMessageHtmlLink":"Warning: FAKE 130 settings using 740"}},{"before":"f00d3dde4df9e9b90be8f30d1a3d7d5383b66f80","after":"23758d4475ebeffa9b84ce2a3f736a01116aea5e","ref":"refs/heads/master","pushedAt":"2023-06-27T18:08:59.782Z","pushType":"push","commitsCount":1,"pusher":{"login":"fribalet","name":"François Ribalet","path":"/fribalet","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3729162?s=80&v=4"},"commit":{"message":"updated Mie table for 130 (copy of 740)","shortMessageHtmlLink":"updated Mie table for 130 (copy of 740)"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEZcNhVQA","startCursor":null,"endCursor":null}},"title":"Activity · seaflow-uw/popcycle"}