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Dockerfile
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Dockerfile
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ARG ARG_BIOC_VERSION=RELEASE_3_15
FROM bioconductor/bioconductor_docker:$ARG_BIOC_VERSION
RUN apt-get update && apt-get install -y \
cmake \
libfontconfig1-dev \
libfreetype6-dev \
libfribidi-dev \
libgeos-dev \
libharfbuzz-dev \
libjpeg-dev \
libpng-dev \
libtiff5-dev \
libxml2-dev \
sqlite3 \
zlib1g-dev \
&& rm -rf /var/lib/apt/lists/*
#
WORKDIR /popcycle/
# Install dependencies in its own layer
COPY DESCRIPTION_docker DESCRIPTION
COPY setup.R setup.R
ARG DEPS_ONLY=TRUE
ARG INSTALL_NCPUS=2
RUN Rscript setup.R
# Install the package itself
COPY DESCRIPTION LICENSE make_docs.R NAMESPACE README.md ./
COPY ./R /popcycle/R
COPY ./executable_scripts ./executable_scripts
COPY ./man ./man
COPY ./inst ./inst
COPY ./tests ./tests
RUN R CMD INSTALL .