renameT1filestoanas.txt

#! /bin/bash
#script to list the full directory titles in bash, you must make sure that all the directories in /scans/ folder only contains the main directory of the file.  For example, the format would be... 
#  /sdata/images/projects/ASD_MM/1/scans/asd_01/b9a577d3-1855-49db-8c3e-7e79135722c6/20130118_155130
# there should be one directory under the asd_01 folder file... 

totalfilenumber=$(find /sdata/images/projects/ASD_MM/1/scans/asd_* -mindepth 2 -maxdepth 2 -type d -print | wc -l)
echo "you have a total of $totalfilenumber in sdata/images/projects/ASD_MM/scans/"
echo "saving the T1 file locates to list T1 files"
# this lists all of the directory files, 3 levels down with a ending of MPRAGE or 2
find /sdata/images/projects/ASD_MM/1/scans/asd_* -maxdepth 3 -name *MPRAGE -o -name 2 > /sdata/images/projects/ASD_MM/1/datafiles/T1files
# this then goes into each of the listed directories you've just changed and renames all the files that start with s* to anas*.  If you have already renamed the file, this shouldn't rename again.  
for d in $(cat /sdata/images/projects/ASD_MM/1/datafiles/T1files) 
do
	cd $d
		for f in s*;
		do mv $f ana${f%%}
		done
done