z.clean.sh

rm -fr average_* virial_figures *log *txt 2.curves_bad.dat

cd DATA

for ((v=1; v<=4 ; v+=1)) do

	if [ $v -eq 1 ]; then
		virus=ZIKV-UG
	fi
	if [ $v -eq 2 ]; then
		virus=ZIKV-BR
	fi
	if [ $v -eq 3 ]; then
		virus=DENV2
	fi
	if [ $v -eq 4 ]; then
		virus=WNV
	fi
		
	cd $virus

	for ((f=4; f<=5 ; f+=1)) do

		if [ $f -eq 1 ]; then
			arch=monomer
		fi
		if [ $f -eq 2 ]; then
			arch=dimer
		fi
		if [ $f -eq 3 ]; then
			arch=dimer_0.005M
		fi
		if [ $f -eq 4 ]; then
			arch=dimer
		fi
		if [ $f -eq 5 ]; then
			arch=d_vdw
		fi
		if [ $f -eq 6 ]; then
			arch=fixed_charges
		fi
		if [ $f -eq 7 ]; then
			arch=charge_central
		fi
		if [ $f -eq 8 ]; then
			arch=charge_distributed
		fi
 
		cd $arch

		echo $virus $arch

		rm -fr pH*
		
	cd ..

	done
cd ..

done

aplay /usr/share/sounds/sound-icons/piano-3.wav