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Update inject_metadata.py to use datalad-catalog utilities #52

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jsheunis opened this issue Oct 4, 2023 · 2 comments · Fixed by #53
Closed

Update inject_metadata.py to use datalad-catalog utilities #52

jsheunis opened this issue Oct 4, 2023 · 2 comments · Fixed by #53

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@jsheunis
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jsheunis commented Oct 4, 2023

The script/module https://github.com/psychoinformatics-de/sfb1451-projects-catalog/blob/main/code/inject_metadata.py contains several functions to generate the base structure of a catalog-compliant metadata item. This functionality will be available in datalad-catalog pending the merging of datalad/datalad-catalog#378. Once that is done, this module should be updated to use those new utility functions.

@jsheunis
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jsheunis commented Oct 5, 2023

Rather, this script: https://github.com/sfb1451/tabby-utils/blob/main/load_tabby.py

Or is the former still used and useful to update? @mslw

@mslw
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mslw commented Oct 5, 2023

We covered this in the lab meeting, but FTR: both are being used.

  • tabby-utils repo covers processing of tabby files (adding records to datasets, extracting metadata straight into catalog)
  • this repo covers all other curation / metadata processing

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