singularity.def

BootStrap: docker
From: fedora:35
%files
    runjulia.sh        /opt/runjulia.sh
    SlurmMonitor.jl.zip /opt/SlurmMonitor.jl.zip

%post
    dnf install -y wget openssh-clients git g++ unzip
    cd /opt
    #git clone https://github.com/bencardoen/SlurmMonitor.jl
    wget https://julialang-s3.julialang.org/bin/linux/x64/1.7/julia-1.7.1-linux-x86_64.tar.gz
    mkdir -p /opt/julia
    mv julia-1.7.1-linux-x86_64.tar.gz /opt/julia
    cd /opt/julia
    tar -xf julia-1.7.1-linux-x86_64.tar.gz
    export PATH=/opt/julia/julia-1.7.1/bin:$PATH
    mkdir -p /opt/juliadepot
    export JULIA_DEPOT_PATH=/opt/juliadepot
    cd /opt
    unzip -q /opt/SlurmMonitor.jl.zip
    cd /opt/SlurmMonitor.jl
    julia --project=/opt/SlurmMonitor.jl -e 'using Pkg; Pkg.update(); ENV["PYTHON"]=""; Pkg.build(); Pkg.instantiate()'
    julia --project=/opt/SlurmMonitor.jl -e 'using SlurmMonitor'
    julia --project=/opt/SlurmMonitor.jl -e 'using Pkg; Pkg.build("SlurmMonitor")'
    #julia --project=/opt/SlurmMonitor.jl -e 'using Pkg; Pkg.test("SlurmMonitor")'
    #julia --project=. --trace-compile=dc_precompile.jl src/precompile.jl
    #julia --project=. src/setupimage.jl
    rm -rf /opt/juliadepot/logs
    ln -s /dev/shm/ /opt/juliadepot/logs

%environment
    export LC_ALL=C
    export PATH=/opt/julia/julia-1.7.1/bin:$PATH
    export JULIA_DEPOT_PATH=/opt/juliadepot

%runscript
    echo "Container was created $NOW"
    echo "Arguments received: $*"
    echo pwd
    exec echo "$@"
    /opt/runjulia.sh "$@"

%labels
    Author Ben Cardoen, bcardoen@sfu.ca
    Version v0.0.1

%help
    This is a container to offer SPECHT without altering the local user environment, for testing purposes.
    singularity exec julia --project=/opt/SPECHT.jl
    or
    #julia --project=/opt/SPECHT.jl --sysimage /opt/SPECHT.jl/sys_img.so