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Shantanu Singh edited this page Sep 15, 2017
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Welcome to the Cytomining hackathon wiki!
We will use this wiki primarily to map out the steps in a typical morphological profiling data analysis workflow (from cell-level raw morphological data to well-level profiles to interpretation/visualization/validation strategies and tools) as well as alternatives for each step. This will provide the structure for the event.
Cytomining Hackathon Participants (spring 2016):
- Aliaksei Vasilevich (de Boer)
- Allen Goodman (Carpenter)
- Anne Carpenter (Carpenter)
- Blake Borgeson (Borgeson)
- Csaba Molnar (Horvath)
- Florian Heigwer (Boutros)
- Harman Bansal (Sundaramurthy)
- Ian Smith (Subramanian)
- John Concannon (Ross)
- Joseph Barry (Huber)
- Joseph Nasser (Subramanian)
- Juan Caicedo (Carpenter)
- Lassi Paavolainen (Horvath)
- Markus Herrmann (Pelkmans)
- Mason Victors (Borgeson)
- Mathias Wawer (Clemons)
- Mohammad Rohban (Carpenter)
- Oren Kraus (Frey)
- Paul Clemons (Clemons)
- Paul Rees (Rees)
- Peng Qiu (Qiu)
- Roger Linington (Linington)
- Ryan Peckner (Jaffe)
- Sam Cooper (Bakal)
- Scott Warchal (Carragher)
- Shantanu Singh (Carpenter)
- Steffen Jaensch (J&J)
- Thouis Jones (Jones)
Implementing profiling workflows
- IA-Lab (AstraZeneca Cambridge)
- Bakal (Inst. Cancer Research London)
- Borgeson (Recursion)
- Boutros (German Cancer Research Center)
- Carpenter (Broad Imaging Platform)
- Carragher (U Edinburgh)
- Clemons (Broad Comp. Chem. Bio)
- de Boer (Maastricht U)
- Frey (U Toronto)
- Horvath (Hungarian Acad of Sciences)
- Huber (EMBL Heidelberg)
- Jaensch (Janssen)
- Jaffe (Broad Comp. Proteomics)
- Jones (Harvard)
- Linington (Simon Fraser U)
- Pelkmans (U Zurich)
- Qiu (Georgia Tech)
- Ross (Novartis High Throughput Biol.)
- Rees (Swansea U)
- Subramanian (Broad CMap)
- Sundaramurthy (Nat. Center for Biol. Sciences)