diff --git a/README.md b/README.md index 6f9d189..b237980 100644 --- a/README.md +++ b/README.md @@ -33,6 +33,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [SQL](#sql) - [C/C++](#c/c++) - [Rust](#rust) + - [SPARQL](#sparql) - [Computational methods and pipelines](#computational-methods-and-pipelines) - [Containerization](#containerization) - [Galaxy](#galaxy) @@ -389,7 +390,6 @@ Below you'll find a curated list of **bioinformatics training material**. All ma ### SQL - [**Data Carpentry** datacarpentry/sql-ecology-lesson](https://github.com/datacarpentry/sql-ecology-lesson) | [website](http://datacarpentry.github.io/sql-ecology-lesson) -- [**Department of Bioinformatics - BiGCaT** BiGCAT-UM/SPARQLTutorialBioSB2019](https://github.com/bigcat-um/SPARQLTutorialBioSB2019) ### C/C++ @@ -400,6 +400,12 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [**Google** google/comprehensive-rust](https://github.com/google/comprehensive-rust) | [website](https://google.github.io/comprehensive-rust/) - [**The Rust Programming Language** rust-lang/rustlings](https://github.com/rust-lang/rustlings) | [website](https://rustlings.cool) +### SPARQL + +- [**SIB Swiss Institute of Bioinformatics** sib-swiss/sparql-training](https://github.com/sib-swiss/sparql-training) +- [**Department of Bioinformatics - BiGCaT** BiGCAT-UM/SPARQLTutorialBioSB2019](https://github.com/bigcat-um/SPARQLTutorialBioSB2019) +- [**SIB Swiss Institute of Bioinformatics** sib-swiss/SPARQL_course](https://github.com/sib-swiss/SPARQL_course) + ## Computational methods and pipelines @@ -480,6 +486,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [**Data Carpentry** datacarpentry/organization-genomics](https://github.com/datacarpentry/organization-genomics) | [website](https://datacarpentry.org/organization-genomics) - [**The Gulbenkian Training Programme in Bioinformatics** GTPB/ELB19F](https://github.com/gtpb/ELB19F) | [website](https://gtpb.github.io/ELB19F/) - [**The McDonnell Genome Institute** genome/bfx-workshop](https://github.com/genome/bfx-workshop) +- [**rapidspeciation** rapidspeciation/biodiversity_genomics_course](https://github.com/rapidspeciation/biodiversity_genomics_course) ### Next generation sequencing @@ -493,6 +500,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/workshop-ngsintro](https://github.com/NBISweden/workshop-ngsintro) | [website](https://NBISweden.github.io/workshop-ngsintro) - [**Institut Français de Bioinformatique (IFB)** IFB-ElixirFr/EBAII](https://github.com/IFB-ElixirFr/EBAII) | [website](https://ifb-elixirfr.github.io/EBAII/) - [**Cloud-SPAN** Cloud-SPAN/00genomics](https://github.com/cloud-span/00genomics) | [website](https://cloud-span.github.io/00genomics/) +- [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/workshop-ngsintro](https://github.com/nbisweden/workshop-ngsintro/) | [website](https://NBISweden.github.io/workshop-ngsintro) ### Transcriptomics @@ -566,6 +574,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/workshop-pgip](https://github.com/NBISweden/workshop-pgip) | [website](https://nbisweden.github.io/workshop-pgip/) - [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2020-Variant_Analysis_Workshop](https://github.com/ucdavis-bioinformatics-training/2020-Variant_Analysis_Workshop) - [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2021-July-Genome-Wide-Association-Studies](https://github.com/ucdavis-bioinformatics-training/2021-July-Genome-Wide-Association-Studies) +- [**Nina Overgaard Therkildsen** nt246/lcwgs-guide-tutorial](https://github.com/nt246/lcwgs-guide-tutorial) ### ChIP-seq @@ -590,10 +599,12 @@ Below you'll find a curated list of **bioinformatics training material**. All ma ### Genome annotation - [**Katharina Hoff** KatharinaHoff/BRAKER-TSEBRA-Workshop](https://github.com/KatharinaHoff/BRAKER-TSEBRA-Workshop) +- [**Katharina Hoff** KatharinaHoff/BRAKER-TSEBRA-Workshop](https://github.com/KatharinaHoff/BRAKER-TSEBRA-Workshop/tree/main) ### Genome assembly - [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2020-Genome_Assembly_Workshop](https://github.com/ucdavis-bioinformatics-training/2020-Genome_Assembly_Workshop) +- [**ebp-nor** ebp-nor/genome-assembly-workshop-2023](https://github.com/ebp-nor/genome-assembly-workshop-2023) ### Metagenomics @@ -643,6 +654,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [**SIB Swiss Institute of Bioinformatics** sib-swiss/NGS-longreads-training](https://github.com/sib-swiss/NGS-longreads-training) | [website](https://sib-swiss.github.io/NGS-longreads-training/) - [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2021-August-Iso-Seq](https://github.com/ucdavis-bioinformatics-training/2021-August-Iso-Seq) - [**Ryan Wick** rrwick/Perfect-bacterial-genome-tutorial](https://github.com/rrwick/Perfect-bacterial-genome-tutorial) +- [**Tim Kahlke** timkahlke/LongRead_tutorials](https://github.com/timkahlke/LongRead_tutorials/) ### Metabolomics @@ -672,8 +684,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [**carpentries-incubator** carpentries-incubator/capstone-novice-spreadsheet-biblio](https://github.com/carpentries-incubator/capstone-novice-spreadsheet-biblio) | [website](http://carpentries-incubator.github.io/capstone-novice-spreadsheet-biblio/) - [**ELIXIR Belgium** ELIXIR-Belgium/rdm-guide](https://github.com/ELIXIR-Belgium/rdm-guide) | [website](https://rdm.elixir-belgium.org) - [**ELIXIR Europe** elixir-europe/rdmkit](https://github.com/elixir-europe/rdmkit) | [website](https://rdmkit.elixir-europe.org) -- [**Korbinian Bösl** ELIXIR-Norway-Training/DMP-writing-workshop](https://github.com/korbinib/DMP-writing-workshop) | [website](https://elixir.no) -- [**SIB Swiss Institute of Bioinformatics** sib-swiss/sparql-training](https://github.com/sib-swiss/sparql-training) +- [**ELIXIR-Norway Training** ELIXIR-Norway-Training/DMP-writing-workshop](https://github.com/ELIXIR-Norway-Training/DMP-writing-workshop) | [website](https://elixir.no) - [**OpenSciency** opensciency/sprint-content](https://github.com/opensciency/sprint-content) | [website](https://opensciency.github.io/sprint-content/) - [**SIB Swiss Institute of Bioinformatics** sib-swiss/ena-seqdata-training](https://github.com/sib-swiss/ena-seqdata-training) | [website](https://sib-swiss.github.io/ena-seqdata-training/) - [**VIB Technologies: Bioinformatics and software projects** vibbits/rdm-introductory-course](https://github.com/vibbits/rdm-introductory-course) @@ -692,7 +703,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma - [**carpentries-incubator** carpentries-incubator/fair-bio-practice](https://github.com/carpentries-incubator/fair-bio-practice) | [website](https://carpentries-incubator.github.io/fair-bio-practice/) - [**carpentries-incubator** carpentries-incubator/fair-for-leaders](https://github.com/carpentries-incubator/fair-for-leaders) | [website](https://carpentries-incubator.github.io/fair-for-leaders/) -- [**elixir-oslo** ELIXIR-Norway-Training/fair-dm-lifesci-june-2022](https://github.com/elixir-oslo/fair-dm-lifesci-june-2022) +- [**ELIXIR-Norway Training** ELIXIR-Norway-Training/fair-dm-lifesci-june-2022](https://github.com/ELIXIR-Norway-Training/fair-dm-lifesci-june-2022) - [**FAIRplus** FAIRplus/the-fair-cookbook](https://github.com/FAIRplus/the-fair-cookbook) | [website](https://faircookbook.elixir-europe.org) - [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/module-repository-submission-dm-practices](https://github.com/NBISweden/module-repository-submission-dm-practices) | [website](https://nbisweden.github.io/module-repository-submission-dm-practices/) - [**ELIXIR Europe Training** elixir-europe-training/ELIXIR-TrP-FAIR-training-handbook](https://github.com/elixir-europe-training/ELIXIR-TrP-FAIR-training-handbook) | [website](https://elixir-europe-training.github.io/ELIXIR-TrP-FAIR-training-handbook/)