unordered_set.hpp

[wRajter]

Greetings,

I have a problem to compile PaPaRa on my Ubuntu. I follow the instructions from the website (https://cme.h-its.org/exelixis/web/software/papara/index.html). Yet, several error messages pop up during the compiling, such as:

In file included from pvec.h:41,
from papara.h:47,
from papara.cpp:30:
ivy_mike/src/ivymike/tree_traversal_utils.h:30:10: fatal error: boost/tr1/unordered_set.hpp: No such file or directory
30 | #include <boost/tr1/unordered_set.hpp>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.

I looked on my boosts, and there is no .unordered_set.hpp file only .h or without extension.

As I have not much informatics background, could you advise how to fix it and explain a bit the problem if possible?

Thank you.

[Robaina]

Getting the same error when trying to compile Papara on Ubuntu. It seems like there is some incompatibility with the latest version (1.77.0) of boost.

Would be helpful if developers point to a working version of boost. Thanks

[vojtech-zarsky]

I had to do small edits on "./papara_*/ivy_mike/src/ivymike/tree_traversal_utils.h" to compile on Ubuntu 20:

Replace "#include <boost/tr1/unordered_set.hpp>" with "#include <boost/unordered_set.hpp>".

Replace "std::tr1::unordered_set" with "boost::unordered_set" on all occasions.

I am attaching the edited file, just remove "_fix.txt" from the file name.

tree_traversal_utils.h_fix.txt

[otaviolovison]

Worked!

[alastairroberts]

Fix worked for me too