-
Notifications
You must be signed in to change notification settings - Fork 7
/
NEWS
246 lines (161 loc) · 8.79 KB
/
NEWS
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
# * RELEASE HISTORY OF THE 'mitml' PACKAGE:
--
# Version 0.4-4 (2021-11-09)
--
* coef, vcov: new methods for extracting pooled parameter estimates and the
pooled variance-covariance matrix
* testEstimates: no longer requires specifying variance estimates (uhat) when
manually pooling estimated parameters (qhat), fixed spurious
warning for 'coxph' models, added initial support for
'glmmTMB'
* testModels: added initial support for 'D4' for models fitted with GLS
('nlme'), added initial support for 'glmmTMB'
# Version 0.4-3 (2021-10-05)
--
* mitml.list2mids: new function (converts objects from 'mitml.list' to 'mids')
* testEstimates, added features (support for ordinal models estimated with
testConstraints, 'MASS::polr')
testModels:
* other: bugfix (fixes vignette build errors)
# Version 0.4-2 (2021-09-10)
--
* testModels: bugfix (fixes unneded refits in 'D1', fixes scoping issue in
'D3' and 'D4')
# Version 0.4-1 (2021-02-05)
--
* fixed Solaris build error
# Version 0.4-0 (2021-01-25)
--
* testEstimates: added initial support for SEM ('lavaan'); argument 'var.comp'
is now deprecated and was replaced by 'extra.pars'
* testModels: added new pooling method for LRTs ('D4'); now adopts more
accurate formula for small-sample degrees of freedom ('df.com');
added initial support for SEM ('lavaan'); expanded support of
'D3' for multilevel models ('lme4') with arbitrary number of
clusters; added 'ariv' argument for different estimators
* testConstraints: added initial support for SEM ('lavaan'); now adopts more
accurate formula for small-sample degrees of freedom ('df.com')
* anova.mitml.results: see 'testModels'; now uses 'D4' and 'D2' as fallback
options (in that order)
* other: general code improvements
# Version 0.3-6 (2018-07-10)
--
* confint: new function, calculating confidence intervals for pooled
estimates (applicable to testEstimates() objects)
* jomoImpute, added features (option to save fewer parameters with
panImpute: 'keep.chains')
* jomoImpute, added features (support for single-level imputation models)
* testEstimates, added features (support for Cox-PH models using 'survival'
testConstraints, package)
testModels:
* testConstraints: added features (pooled estimates and SEs of specified
constraints)
* mitmlComplete: bugfix (fixes row ordering issue)
* jomoImpute, bugfix (fixes erroneous removal of global seed)
panImpute:
* other: added vignettes (analysis, level-2 imputation)
# Version 0.3-5 (2017-03-14)
--
* testEstimates: now prints the two-tailed p-value (as opposed to one-tailed
in earlier versions), revised label for p-values, improved
output with constrained variance components
* testModels: revised label for p-values
* testEstimates: added features (support for GEEs using the 'geepack' package)
* testModels: added features (support for GEEs using the 'geepack' package)
* testConstraints: added features (support for GEEs using the 'geepack' package)
* c.mitml.list: new functions, combining lists of multiply imputed data sets
(and rbind..., by data set (c.mitml.list), row (rbind.mitml.list), or column
cbind...) (cbind.mitml.list)
* sort.mitml.list: new function, sorting lists of multiply imputed data sets by
one or several variables (similar to '?order')
* subset.mitml.list: new function, generating subsets for lists of multiply
imputed data sets (similar to '?subset')
* amelia2mitml.list: new function, converting imputations generated by the
'Amelia' package to 'mitml.list'
* justice: updated data set (added categorical variable, missing data at
Level 2)
# Version 0.3-4 (2016-09-12)
--
* mitmlComplete: changed default arguments ('print' now defaults to 'all',
returning list of completed data sets)
* jomoImpute: bugfix (fixes error in which jomoImpute() rejected correctly
specified priors when 'group=NULL')
* mitmlComplete: bugfix (fixes error with categorical target variables when
there are no missing data)
* plot: adjusted warning message for 'pos' argument to include
'beta2'.
# Version 0.3-3 (2016-07-04)
--
* jomoImpute: added features (support for imputation of cluster-level
variables, i.e., the two-level procedures "jomo2...")
* print/summary: revised appearance in two-level models (model summary is
displayed separately by level for two-level imputation
procedures)
* plot: additional value for print argument ("beta2", denoting the
regression coefficients of the cluster-level imputation
model)
* jomoImpute: bugfix (fixes error in the usage of starting values in cases
with only continuous/no categorical data)
* plot: revised formatting of the plot title (order of variables)
# Version 0.3-2 (2016-05-10)
--
* plot: added features (requesting single parameters, thinning of
the chain prior to plotting)
* summary: added features (summary of autocorrelation)
* plot: revised appearance and behavior (burn-in printed in grey,
included Rhat and autocorrelation at lag k in the posterior
summary; for trace="burnin", the summary is now calculated
for the burn-in phase, not the imputation phase)
# Version 0.3-1 (2016-05-10)
--
* anova: new function based on objects of class 'mitml.result',
facilitating comparisons for a sequence of models
* long2mitml.list: new function, converting multiple imputations from "long"
format to 'mitml.list'
* jomo2mitml.list: new function, converting imputations generated byt the 'jomo'
package to 'mitml.list'
* multilevelR2: new function, calculating measures of explained variance
(R^2) for multilevel models and based on observed or multiply
imputed data sets
* justice: new data set, including re-simulated data based on the study
of procedural justice, justice climate, and organizational
satisfaction by Liao and Rupp (2005)
* plot: renamed export directory ("mitmlPlots", formerly "panPlots")
* testModels: added automatic refit using ML for REML fitted models
* mitmlComplete: bugfix (fixes error with mixed categorical and continuous
variables)
* plot: bugfix (fixes handling of latent background variables for
categorical variables)
# Version 0.3-0 (2016-03-15)
--
* jomoImpute: new function, providing an interface to the jomo package for
imputation of missing values at level 1
- includes adjustments in mitml.complete as well as the
summary, print, and plot methods)
- includes minor changes in the interpretation of the formula
and type arguments
- adds a few slots to the 'mitml' object class
* summary: bugfix (fixes behavior when applied to fixed parameters
with zero variance)
* as.mitml.list: bugfix (fixes order of class attributes)
# Version 0.2-4 (2015-10-19)
--
* clusterMeans: code improvements
* panImpute: code improvements
* testConstraints: added features (model-independent input)
* testEstimates: added features (model-independent input)
* testModels: comparisons of REML fits through D2 is now permitted
* summary: bugfix (n.Rhat now takes effect), added features (goodness
of approximation)
# Version 0.2-3 (2015-07-09)
--
* panImpute: added features (silent mode), bugfix (ordering of variables
with nonstandard priors)
* summary: added features (details on PSR)
* plot: revised layout, added features (trend line, posterior
summary), bugfix (plot labels)
* testModels: bugfix (structural zeros in lmer objects)
* studentratings: renamed variable (data set)
# Version 0.2-2 (2015-05-23)
--
* initial release