From 306731d2f72e02134fb0ce0f76893dfc910798e5 Mon Sep 17 00:00:00 2001 From: fleisch Date: Thu, 20 Jun 2024 12:37:38 +0200 Subject: [PATCH] fixed/updated licenses --- README.md | 4 +- build.gradle | 12 ++++- buildSrc/src/main/java/SiriusPlatform.java | 2 +- .../bioinf/ms/frontend/core/Workspace.java | 14 ++--- .../subtools/decomp/AlphabetParser.java | 18 ------- .../tables/ExportPredictionsOptions.java | 2 +- .../export/tables/PredictionsOptions.java | 14 ++--- .../fingerprinter/FingerprinterOptions.java | 14 ++--- .../fingerprinter/FingerprinterWorkflow.java | 14 ++--- .../frontend/subtools/login/LoginOptions.java | 14 ++--- .../NumberOfMsNovelistCandidates.java | 14 ++--- .../subtools/settings/SettingsOptions.java | 14 ++--- .../summaries/NoSqlCanopusSummaryWriter.java | 14 ++--- .../summaries/NoSqlDeNovoSummaryWriter.java | 14 ++--- .../summaries/NoSqlFormulaSummaryWriter.java | 14 ++--- .../NoSqlStructureSummaryWriter.java | 14 ++--- .../summaries/NoSqlSummarySubToolJob.java | 14 ++--- .../SiriusProjectSpaceSummarySubToolJob.java | 14 ++--- .../subtools/summaries/SummaryOptions.java | 14 ++--- .../updatefps/UpdateFingerprintOptions.java | 14 ++--- .../updatefps/UpdateFingerprintsWorkflow.java | 14 ++--- .../AbstractProjectSpaceManager.java | 14 ++--- .../bioinf/projectspace/FCandidate.java | 14 ++--- .../IncompatibleFingerprintDataException.java | 14 ++--- .../unijena/bioinf/projectspace/Instance.java | 14 ++--- .../bioinf/projectspace/NoSQLInstance.java | 12 ++--- .../bioinf/projectspace/NoSqlFCandidate.java | 12 ++--- .../projectspace/ProjectSpaceManager.java | 12 ++--- .../SiriusProjectSpaceFCandidate.java | 12 ++--- .../SiriusProjectSpaceManagerFactory.java | 14 ++--- .../de/unijena/bioinf/ms/gui/SiriusGui.java | 12 ++--- .../bioinf/ms/gui/SiriusGuiFactory.java | 12 ++--- .../ms/gui/actions/AbstractGuiAction.java | 12 ++--- .../gui/actions/AbstractUserPortalAction.java | 14 ++--- .../bioinf/ms/gui/actions/ActionUtils.java | 14 ++--- .../actions/ExplorerLicRegisterAction.java | 12 ++--- .../ms/gui/actions/InvertFilterAction.java | 2 +- .../ms/gui/actions/ResetFilterAction.java | 2 +- .../gui/actions/SummarizeSelectedAction.java | 14 ++--- .../compound_classes/CompoundClassBean.java | 14 ++--- .../ms/gui/dialogs/ChangeAdductDialog.java | 14 ++--- .../dialogs/CompoundFilterOptionsDialog.java | 2 +- .../ms/gui/dialogs/ExecutionDialog.java | 14 ++--- .../dialogs/input/ImportPeakListDialog.java | 12 ++--- .../ms/gui/fingerid/ExpansiveSearchLabel.java | 14 ++--- .../bioinf/ms/gui/fingerid/LipidLabel.java | 16 +++--- .../lcms_viewer/LCMSCompoundSummaryPanel.java | 2 +- .../bioinf/ms/gui/login/AccountDialog.java | 12 ++--- .../bioinf/ms/gui/login/AccountPanel.java | 12 ++--- .../ms/gui/login/SubscriptionDialog.java | 14 ++--- .../gui/login/SubscriptionHTMLRenderer.java | 14 ++--- .../bioinf/ms/gui/login/UserLoginDialog.java | 14 ++--- .../ms/gui/mainframe/WebServiceInfoPanel.java | 14 ++--- .../tabs/SpectrumAnnotationJJob.java | 14 ++--- .../gui/ms_viewer/SpectraViewContainer.java | 14 ++--- .../gui/ms_viewer/WebViewSpectraViewer.java | 2 +- .../bioinf/ms/gui/net/ConnectionChecks.java | 14 ++--- .../gui/properties/ConfidenceDisplayMode.java | 12 ++--- .../ms/gui/properties/GuiProperties.java | 12 ++--- .../spectral_matching/SpectralMatchBean.java | 14 ++--- .../spectral_matching/SpectralMatchList.java | 14 ++--- .../SpectralMatchTableFormat.java | 14 ++--- .../SpectralMatchingTableView.java | 14 ++--- .../ms/gui/table/SiriusGlazedLists.java | 14 ++--- .../bioinf/ms/gui/utils/ActionJLabel.java | 14 ++--- .../utils/CompoundFilterMatcherEditor.java | 2 +- .../ms/gui/utils/CompoundFilterModel.java | 2 +- .../bioinf/ms/gui/utils/DropImage.java | 14 ++--- .../bioinf/ms/gui/utils/JListDropImage.java | 14 ++--- .../ms/gui/utils/JTextAreaDropImage.java | 14 ++--- .../unijena/bioinf/ms/gui/utils/Loadable.java | 14 ++--- .../MatcherEditorWithOptionalInvert.java | 2 +- ...xDoubleAsInfinityTextFormatterFactory.java | 2 +- .../matchers/BackgroundJJobMatcheEditor.java | 14 ++--- .../ms/gui/webView/WebViewBrowserDialog.java | 14 ++--- .../ms/gui/webView/WebViewBrowserJPanel.java | 14 ++--- .../bioinf/ms/gui/webView/WebViewPanel.java | 2 +- .../ms/gui/webView/WebviewHTMLTextJPanel.java | 14 ++--- sirius_nightsky_sdk/build.gradle | 15 ++++++ .../nightsky/sdk/NightSkyErrorResponse.java | 2 +- .../nightsky/sdk/api/ServerSentEventApi.java | 22 +------- .../de/unijena/bioinf/sse/DataEventType.java | 2 +- .../ms/backgroundruns/BackgroundRuns.java | 12 ++--- .../ms/backgroundruns/ComputeRootOption.java | 12 ++--- .../ImportMsFromResourceWorkflow.java | 12 ++--- .../ImportPeaksFomResourceWorkflow.java | 12 ++--- .../configuration/GlobalConfig.java | 14 ++--- .../configuration/SecurityConfig.java | 12 ++--- .../project/NitriteNoSqlProjectConfig.java | 12 ++--- .../project/SiriusProjectSpaceConfig.java | 12 ++--- .../controller/CompoundController.java | 12 ++--- .../middleware/controller/GuiController.java | 12 ++--- .../controller/GuiControllerAdvanced.java | 14 ++--- .../controller/GuiControllerBasic.java | 12 ++--- .../middleware/controller/InfoController.java | 12 ++--- .../middleware/controller/JobController.java | 12 ++--- .../controller/LoginController.java | 12 ++--- .../controller/ProjectController.java | 12 ++--- .../controller/RedirectController.java | 19 ------- .../SearchableDatabaseController.java | 12 ++--- .../middleware/controller/SseController.java | 12 ++--- .../model/MultipartInputResource.java | 12 ++--- .../model/annotations/BinaryFingerprint.java | 14 ++--- .../model/annotations/CanopusLevels.java | 14 ++--- .../model/annotations/CanopusPrediction.java | 14 ++--- .../model/annotations/CompoundClass.java | 12 ++--- .../model/annotations/CompoundClasses.java | 12 ++--- .../annotations/ConsensusAnnotations.java | 14 ++--- .../annotations/ConsensusAnnotationsCSI.java | 14 ++--- .../ConsensusAnnotationsDeNovo.java | 14 ++--- .../model/annotations/FormulaCandidate.java | 14 ++--- .../model/annotations/FragmentNode.java | 14 ++--- .../model/annotations/FragmentationTree.java | 12 ++--- .../model/annotations/LipidAnnotation.java | 12 ++--- .../model/annotations/LossEdge.java | 14 ++--- .../annotations/SpectralLibraryMatch.java | 14 ++--- .../model/annotations/StructureCandidate.java | 12 ++--- .../StructureCandidateFormula.java | 12 ++--- .../annotations/StructureCandidateScored.java | 12 ++--- .../middleware/model/compounds/Compound.java | 12 ++--- .../model/compounds/CompoundImport.java | 14 ++--- .../compute/AbstractImportSubmission.java | 12 ++--- .../model/compute/AbstractSubmission.java | 12 ++--- .../model/compute/CommandSubmission.java | 12 ++--- .../compute/DatabaseImportJobSubmission.java | 14 ++--- .../compute/DatabaseImportSubmission.java | 14 ++--- .../model/compute/ImportFormat.java | 14 ++--- .../compute/ImportLocalFilesSubmission.java | 12 ++--- .../ImportMultipartFilesSubmission.java | 12 ++--- .../model/compute/ImportStringSubmission.java | 12 ++--- .../ms/middleware/model/compute/Job.java | 12 ++--- .../middleware/model/compute/JobProgress.java | 12 ++--- .../model/compute/JobSubmission.java | 14 ++--- .../model/compute/NullCheckMapBuilder.java | 12 ++--- .../model/compute/tools/Canopus.java | 14 ++--- .../compute/tools/FingerprintPrediction.java | 14 ++--- .../model/compute/tools/MsNovelist.java | 14 ++--- .../model/compute/tools/Sirius.java | 14 ++--- .../compute/tools/SpectralLibrarySearch.java | 12 ++--- .../compute/tools/StructureDbSearch.java | 14 ++--- .../middleware/model/compute/tools/Tool.java | 14 ++--- .../model/compute/tools/Zodiac.java | 14 ++--- .../model/databases/SearchableDatabase.java | 14 ++--- .../SearchableDatabaseParameters.java | 14 ++--- .../model/databases/SearchableDatabases.java | 12 ++--- .../BackgroundComputationsStateEvent.java | 12 ++--- .../model/events/ProjectChangeEvent.java | 12 ++--- .../middleware/model/events/ServerEvent.java | 14 ++--- .../model/events/ServerEventImpl.java | 12 ++--- .../middleware/model/events/ServerEvents.java | 12 ++--- .../model/features/AlignedFeatureQuality.java | 12 ++--- .../model/features/AnnotatedMsMsData.java | 12 ++--- .../model/features/FeatureImport.java | 14 ++--- .../model/features/FeatureImports.java | 14 ++--- .../ms/middleware/model/gui/GuiInfo.java | 14 ++--- .../middleware/model/gui/GuiParameters.java | 54 +++---------------- .../ms/middleware/model/gui/GuiResultTab.java | 12 ++--- .../bioinf/ms/middleware/model/info/Info.java | 12 ++--- .../ms/middleware/model/info/LicenseInfo.java | 14 ++--- .../model/login/AccountCredentials.java | 35 +++--------- .../middleware/model/login/AccountInfo.java | 34 +++--------- .../middleware/model/login/Subscription.java | 14 ++--- .../model/projects/ImportResult.java | 12 ++--- .../model/projects/ProjectInfo.java | 19 ------- .../model/spectra/AnnotatedPeak.java | 34 +++--------- .../model/spectra/AnnotatedSpectrum.java | 20 ------- .../middleware/model/spectra/ParentPeak.java | 14 ++--- .../model/spectra/SpectrumAnnotation.java | 12 ++--- .../middleware/model/spectra/Spectrums.java | 12 ++--- .../service/annotations/AnnotationUtils.java | 14 ++--- .../service/compute/ComputeService.java | 12 ++--- .../service/compute/ComputeServiceImpl.java | 12 ++--- .../service/databases/ChemDbService.java | 12 ++--- .../service/databases/ChemDbServiceImpl.java | 12 ++--- .../service/events/EventService.java | 12 ++--- .../service/events/SseEventService.java | 12 ++--- .../ms/middleware/service/gui/GuiService.java | 12 ++--- .../service/gui/GuiServiceImpl.java | 12 ++--- .../service/info/ConnectionChecker.java | 12 ++--- .../middleware/service/projects/Project.java | 12 ++--- .../projects/ProjectSpaceManagerProvider.java | 12 ++--- .../service/projects/ProjectsProvider.java | 12 ++--- .../projects/SiriusProjectSpaceImpl.java | 12 ++--- .../SiriusProjectSpaceProviderImpl.java | 12 ++--- 184 files changed, 1102 insertions(+), 1278 deletions(-) diff --git a/README.md b/README.md index eeb4a97d51..246034ef4b 100644 --- a/README.md +++ b/README.md @@ -27,13 +27,13 @@ Main developers of SIRIUS are the [Böcker group](https://bio.informatik.uni-jen -### SIRIUS+CSI:FingerID GUI and CLI - Version 6.0.1-SNAPSHOT (2024-06-14) +### SIRIUS+CSI:FingerID GUI and CLI - Version 6.0.1-SNAPSHOT (2024-06-20) ##### These versions include the Java Runtime Environment, so there is no need to install Java separately! Just download, install/unpack and execute. - for Windows (64bit): [msi](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-win64.msi) / [zip](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-win64.zip) - for Mac (64bit): [pkg](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-osx64.pkg) / [zip](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-osx64.zip) - for Linux (64bit): [zip](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-linux64.zip) -### SIRIUS+CSI:FingerID Command-Line Interface only - Version 6.0.1-SNAPSHOT (2024-06-14) +### SIRIUS+CSI:FingerID Command-Line Interface only - Version 6.0.1-SNAPSHOT (2024-06-20) ##### These versions include the Java Runtime Environment, so there is no need to install Java separately! Just download, install/unpack and execute. - for Windows (64bit): [msi](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-win64-headless.msi) / [zip](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-win64-headless.zip) - for Mac (64bit): [pkg](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-osx64-headless.pkg) / [zip](https://github.com/sirius-ms/sirius/releases/download/v6.0.1-SNAPSHOT/sirius-6.0.1-SNAPSHOT-osx64-headless.zip) diff --git a/build.gradle b/build.gradle index e6f5187a9b..2464983b37 100644 --- a/build.gradle +++ b/build.gradle @@ -182,12 +182,20 @@ subprojects { skip() } //build only artifacts from modules that contain code - if (new File(projectDir, "src").isDirectory()) { - println(new File(projectDir, "src")) + if (new File(projectDir, "src/main").isDirectory() && !"sirius_rest_service".equalsIgnoreCase(project.name) && !"buildSrc".equalsIgnoreCase(project.name)) { publishing { publications { mavenJava(MavenPublication) { from project.components.java + + pom { + licenses { + license { + name = 'GNU Affero General Public License, Version 3.0' + url = 'https://www.gnu.org/licenses/agpl-3.0.txt' + } + } + } } } } diff --git a/buildSrc/src/main/java/SiriusPlatform.java b/buildSrc/src/main/java/SiriusPlatform.java index 17b2c1d359..40bbc260fd 100644 --- a/buildSrc/src/main/java/SiriusPlatform.java +++ b/buildSrc/src/main/java/SiriusPlatform.java @@ -4,7 +4,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/core/Workspace.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/core/Workspace.java index 641849002e..d627ca3d70 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/core/Workspace.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/core/Workspace.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.core; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/decomp/AlphabetParser.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/decomp/AlphabetParser.java index 2cc07bd538..6b4244677d 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/decomp/AlphabetParser.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/decomp/AlphabetParser.java @@ -16,24 +16,6 @@ * * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ - -/* - * This file is part of the SIRIUS library for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2015 Kai Dührkop - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 2.1 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU General Public License along with SIRIUS. If not, see . - */ package de.unijena.bioinf.ms.frontend.subtools.decomp; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/ExportPredictionsOptions.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/ExportPredictionsOptions.java index ef1d64ce35..d3393b4469 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/ExportPredictionsOptions.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/ExportPredictionsOptions.java @@ -2,7 +2,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/PredictionsOptions.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/PredictionsOptions.java index 1cb49a1fef..2592fabfd5 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/PredictionsOptions.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/export/tables/PredictionsOptions.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.export.tables; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterOptions.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterOptions.java index da30f75315..c086fb42d0 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterOptions.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterOptions.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.fingerprinter; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterWorkflow.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterWorkflow.java index 9ac959df09..607fbadfef 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterWorkflow.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/fingerprinter/FingerprinterWorkflow.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.fingerprinter; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/login/LoginOptions.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/login/LoginOptions.java index 53a1151d77..447f393526 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/login/LoginOptions.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/login/LoginOptions.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.login; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/msnovelist/NumberOfMsNovelistCandidates.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/msnovelist/NumberOfMsNovelistCandidates.java index 415c43410a..354b418597 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/msnovelist/NumberOfMsNovelistCandidates.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/msnovelist/NumberOfMsNovelistCandidates.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.msnovelist; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/settings/SettingsOptions.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/settings/SettingsOptions.java index fe005a5d00..e3f1098cb4 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/settings/SettingsOptions.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/settings/SettingsOptions.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.settings; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlCanopusSummaryWriter.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlCanopusSummaryWriter.java index e13e9ea6b4..aabc803b34 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlCanopusSummaryWriter.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlCanopusSummaryWriter.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.summaries; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlDeNovoSummaryWriter.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlDeNovoSummaryWriter.java index a50ed864ef..9a729b0705 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlDeNovoSummaryWriter.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlDeNovoSummaryWriter.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.summaries; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlFormulaSummaryWriter.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlFormulaSummaryWriter.java index b0703172fc..6890c22ce6 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlFormulaSummaryWriter.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlFormulaSummaryWriter.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.summaries; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlStructureSummaryWriter.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlStructureSummaryWriter.java index 18499038f3..c4d6f5620b 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlStructureSummaryWriter.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlStructureSummaryWriter.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.summaries; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlSummarySubToolJob.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlSummarySubToolJob.java index 55c17e0e85..91085ecea9 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlSummarySubToolJob.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/NoSqlSummarySubToolJob.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.summaries; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SiriusProjectSpaceSummarySubToolJob.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SiriusProjectSpaceSummarySubToolJob.java index 5f54f0293f..e3512e4413 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SiriusProjectSpaceSummarySubToolJob.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SiriusProjectSpaceSummarySubToolJob.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.summaries; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SummaryOptions.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SummaryOptions.java index c0be71e17f..aa9ae775a5 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SummaryOptions.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/summaries/SummaryOptions.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.summaries; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintOptions.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintOptions.java index b9b5b271d3..8470a115d7 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintOptions.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintOptions.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.updatefps; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintsWorkflow.java b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintsWorkflow.java index 2527f8b6ce..b3594cb339 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintsWorkflow.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/ms/frontend/subtools/updatefps/UpdateFingerprintsWorkflow.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.frontend.subtools.updatefps; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/AbstractProjectSpaceManager.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/AbstractProjectSpaceManager.java index 887796a06f..aa535b5b2a 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/AbstractProjectSpaceManager.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/AbstractProjectSpaceManager.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/FCandidate.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/FCandidate.java index 8968c937c3..18a1567f16 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/FCandidate.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/FCandidate.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/IncompatibleFingerprintDataException.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/IncompatibleFingerprintDataException.java index e966c7e5dc..7925fa8fd9 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/IncompatibleFingerprintDataException.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/IncompatibleFingerprintDataException.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/Instance.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/Instance.java index 7a44e28227..bd192579ab 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/Instance.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/Instance.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSQLInstance.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSQLInstance.java index 4fc9838a51..c4abe9b6ab 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSQLInstance.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSQLInstance.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSqlFCandidate.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSqlFCandidate.java index fd4d0ca602..0118e458bb 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSqlFCandidate.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/NoSqlFCandidate.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/ProjectSpaceManager.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/ProjectSpaceManager.java index 45d5ce5b59..e1900861dd 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/ProjectSpaceManager.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/ProjectSpaceManager.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceFCandidate.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceFCandidate.java index 1cea891b49..c551b8aacc 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceFCandidate.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceFCandidate.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceManagerFactory.java b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceManagerFactory.java index 0b7a941441..ee20091522 100644 --- a/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceManagerFactory.java +++ b/sirius_cli/src/main/java/de/unijena/bioinf/projectspace/SiriusProjectSpaceManagerFactory.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.projectspace; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGui.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGui.java index 81db900906..ca9ae50361 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGui.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGui.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGuiFactory.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGuiFactory.java index 70f2cd1da2..51a57c1066 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGuiFactory.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/SiriusGuiFactory.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractGuiAction.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractGuiAction.java index 05a8ad5b89..bee21ab482 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractGuiAction.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractGuiAction.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.actions; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractUserPortalAction.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractUserPortalAction.java index 8cee4cbb26..d29d6af9ba 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractUserPortalAction.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/AbstractUserPortalAction.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.actions; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ActionUtils.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ActionUtils.java index 0da5b7f6c5..84476c6e3d 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ActionUtils.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ActionUtils.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.actions; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ExplorerLicRegisterAction.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ExplorerLicRegisterAction.java index e4a9d6c969..92b7d45bc9 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ExplorerLicRegisterAction.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ExplorerLicRegisterAction.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.actions; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/InvertFilterAction.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/InvertFilterAction.java index 44481ac9f5..d8164c9c6d 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/InvertFilterAction.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/InvertFilterAction.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2021 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ResetFilterAction.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ResetFilterAction.java index cc27525bfb..0b1c8cf0e5 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ResetFilterAction.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/ResetFilterAction.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2021 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/SummarizeSelectedAction.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/SummarizeSelectedAction.java index e7f307cbb6..2da757faaf 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/SummarizeSelectedAction.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/actions/SummarizeSelectedAction.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.actions; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/canopus/compound_classes/CompoundClassBean.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/canopus/compound_classes/CompoundClassBean.java index 6ca0f3318f..0462bde076 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/canopus/compound_classes/CompoundClassBean.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/canopus/compound_classes/CompoundClassBean.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.canopus.compound_classes; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ChangeAdductDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ChangeAdductDialog.java index 6a2c8a70ac..492d6a3291 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ChangeAdductDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ChangeAdductDialog.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.dialogs; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/CompoundFilterOptionsDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/CompoundFilterOptionsDialog.java index 0a01724bfc..43b11f9ffe 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/CompoundFilterOptionsDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/CompoundFilterOptionsDialog.java @@ -4,7 +4,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2021 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ExecutionDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ExecutionDialog.java index a199026b74..ac5899a312 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ExecutionDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/ExecutionDialog.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.dialogs; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/input/ImportPeakListDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/input/ImportPeakListDialog.java index d77c911249..8013d6bd56 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/input/ImportPeakListDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/dialogs/input/ImportPeakListDialog.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.dialogs.input; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/ExpansiveSearchLabel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/ExpansiveSearchLabel.java index ab2e78d7c1..17cad34392 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/ExpansiveSearchLabel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/ExpansiveSearchLabel.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.fingerid; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/LipidLabel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/LipidLabel.java index 2aa07b9a5b..0ecbb188c5 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/LipidLabel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/fingerid/LipidLabel.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.fingerid; @@ -24,9 +24,7 @@ import de.unijena.bioinf.ms.gui.configs.Colors; import de.unijena.bioinf.ms.gui.table.ActiveElementChangedListener; import de.unijena.bioinf.ms.gui.utils.GuiUtils; -import de.unijena.bioinf.ms.nightsky.sdk.model.FormulaCandidate; import de.unijena.bioinf.ms.nightsky.sdk.model.LipidAnnotation; -import de.unijena.bioinf.projectspace.FormulaResultBean; import de.unijena.bioinf.projectspace.InstanceBean; import org.jetbrains.annotations.NotNull; import org.slf4j.LoggerFactory; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/lcms_viewer/LCMSCompoundSummaryPanel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/lcms_viewer/LCMSCompoundSummaryPanel.java index 89f7cf8232..e3bff6382a 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/lcms_viewer/LCMSCompoundSummaryPanel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/lcms_viewer/LCMSCompoundSummaryPanel.java @@ -1,7 +1,7 @@ /* * This file is part of the SIRIUS library for analyzing MS and MS/MS data * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, Chair of Bioinformatics, Friedrich-Schilller University. + * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountDialog.java index 042ad37613..c778ac4686 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountDialog.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.login; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountPanel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountPanel.java index 82104dc3fc..f0587ff4f8 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountPanel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/AccountPanel.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.login; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionDialog.java index c969e1494b..59724b12a1 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionDialog.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.login; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionHTMLRenderer.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionHTMLRenderer.java index b7d788c3b5..f1e1e000b8 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionHTMLRenderer.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/SubscriptionHTMLRenderer.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.login; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/UserLoginDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/UserLoginDialog.java index b07e2aecec..130e6d90f9 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/UserLoginDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/login/UserLoginDialog.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.login; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/WebServiceInfoPanel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/WebServiceInfoPanel.java index 90364a083a..90701c2781 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/WebServiceInfoPanel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/WebServiceInfoPanel.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.mainframe; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/result_panel/tabs/SpectrumAnnotationJJob.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/result_panel/tabs/SpectrumAnnotationJJob.java index 6ac6b4f809..5f3dd38f8d 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/result_panel/tabs/SpectrumAnnotationJJob.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/mainframe/result_panel/tabs/SpectrumAnnotationJJob.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.mainframe.result_panel.tabs; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/SpectraViewContainer.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/SpectraViewContainer.java index e04fb34cac..10ac8e9ac2 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/SpectraViewContainer.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/SpectraViewContainer.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.ms_viewer; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/WebViewSpectraViewer.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/WebViewSpectraViewer.java index 101db1cd6d..bd36e25dfc 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/WebViewSpectraViewer.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/ms_viewer/WebViewSpectraViewer.java @@ -2,7 +2,7 @@ * This file is part of the SIRIUS Software for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer, Marvin Meusel and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/net/ConnectionChecks.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/net/ConnectionChecks.java index f89a301b72..dee69db46e 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/net/ConnectionChecks.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/net/ConnectionChecks.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.net; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/ConfidenceDisplayMode.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/ConfidenceDisplayMode.java index 2132f50f58..c225b92b40 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/ConfidenceDisplayMode.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/ConfidenceDisplayMode.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.properties; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/GuiProperties.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/GuiProperties.java index 09d2d9a740..dfef0f096e 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/GuiProperties.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/properties/GuiProperties.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.properties; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchBean.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchBean.java index f6cfc63612..c5d69b76cb 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchBean.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchBean.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.spectral_matching; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchList.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchList.java index 5f1adb93bb..4d4400c3db 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchList.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchList.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.spectral_matching; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchTableFormat.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchTableFormat.java index 019a4022f5..275881fc7c 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchTableFormat.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchTableFormat.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.spectral_matching; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchingTableView.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchingTableView.java index 2f91bd7709..e979c4f839 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchingTableView.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/spectral_matching/SpectralMatchingTableView.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.spectral_matching; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/table/SiriusGlazedLists.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/table/SiriusGlazedLists.java index 4d198d964f..d3955eadd7 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/table/SiriusGlazedLists.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/table/SiriusGlazedLists.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.table; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/ActionJLabel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/ActionJLabel.java index 1b2a602fcc..00b2405fe6 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/ActionJLabel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/ActionJLabel.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.utils; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterMatcherEditor.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterMatcherEditor.java index 73c1f4dd90..8b6e5a135e 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterMatcherEditor.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterMatcherEditor.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2021 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterModel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterModel.java index e8f1008dca..6d57733c61 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterModel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/CompoundFilterModel.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2021 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/DropImage.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/DropImage.java index 3738ecc1ee..cc303ae6ee 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/DropImage.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/DropImage.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.utils; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JListDropImage.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JListDropImage.java index 938c31cd60..efc47d2ef7 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JListDropImage.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JListDropImage.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.utils; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JTextAreaDropImage.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JTextAreaDropImage.java index 640d034cca..19c93a4db0 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JTextAreaDropImage.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/JTextAreaDropImage.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.utils; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/Loadable.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/Loadable.java index 26fdff8c5e..5dab2106f1 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/Loadable.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/Loadable.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.utils; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MatcherEditorWithOptionalInvert.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MatcherEditorWithOptionalInvert.java index 5031dfee43..e841b01856 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MatcherEditorWithOptionalInvert.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MatcherEditorWithOptionalInvert.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2021 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MaxDoubleAsInfinityTextFormatterFactory.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MaxDoubleAsInfinityTextFormatterFactory.java index fa2967f0ed..a7ec005f39 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MaxDoubleAsInfinityTextFormatterFactory.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/MaxDoubleAsInfinityTextFormatterFactory.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2021 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/matchers/BackgroundJJobMatcheEditor.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/matchers/BackgroundJJobMatcheEditor.java index ff1ec2b45c..73b0e07919 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/matchers/BackgroundJJobMatcheEditor.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/matchers/BackgroundJJobMatcheEditor.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.utils.matchers; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserDialog.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserDialog.java index db4ab6815e..c47dea302b 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserDialog.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserDialog.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.webView; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserJPanel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserJPanel.java index e19ef28ca5..783b9a0a60 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserJPanel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewBrowserJPanel.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.webView; diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewPanel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewPanel.java index 060af357fd..7b0ae0a635 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewPanel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebViewPanel.java @@ -2,7 +2,7 @@ * This file is part of the SIRIUS Software for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer, Marvin Meusel and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License diff --git a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebviewHTMLTextJPanel.java b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebviewHTMLTextJPanel.java index d7276c34da..b348b68f68 100644 --- a/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebviewHTMLTextJPanel.java +++ b/sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/webView/WebviewHTMLTextJPanel.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.gui.webView; diff --git a/sirius_nightsky_sdk/build.gradle b/sirius_nightsky_sdk/build.gradle index 5998df818a..e71aed8492 100644 --- a/sirius_nightsky_sdk/build.gradle +++ b/sirius_nightsky_sdk/build.gradle @@ -33,6 +33,21 @@ allprojects { reactor_netty_version = "1.1.20" } + publishing { + publications { + mavenJava(MavenPublication) { + pom { + licenses { + license { + name = 'GNU Lesser General Public License, Version 3.0' + url = 'https://www.gnu.org/licenses/lgpl-3.0.txt' + } + } + } + } + } + } + artifactory { contextUrl = 'https://bio.informatik.uni-jena.de/repository/' publish { diff --git a/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/NightSkyErrorResponse.java b/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/NightSkyErrorResponse.java index 1856a726a6..4fc98d5da7 100644 --- a/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/NightSkyErrorResponse.java +++ b/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/NightSkyErrorResponse.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/ServerSentEventApi.java b/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/ServerSentEventApi.java index a044443368..ec23f16904 100644 --- a/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/ServerSentEventApi.java +++ b/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/ServerSentEventApi.java @@ -3,27 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * - * This file is part of the SIRIUS library for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/sse/DataEventType.java b/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/sse/DataEventType.java index 472d33bad4..93e816dc2d 100644 --- a/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/sse/DataEventType.java +++ b/sirius_nightsky_sdk/src/main/java/de/unijena/bioinf/sse/DataEventType.java @@ -3,7 +3,7 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/BackgroundRuns.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/BackgroundRuns.java index 3447fbce73..7040272492 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/BackgroundRuns.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/BackgroundRuns.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.backgroundruns; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ComputeRootOption.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ComputeRootOption.java index 1a22715106..923ce30013 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ComputeRootOption.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ComputeRootOption.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.backgroundruns; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportMsFromResourceWorkflow.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportMsFromResourceWorkflow.java index d6bd764184..3265e2b8cd 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportMsFromResourceWorkflow.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportMsFromResourceWorkflow.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.backgroundruns; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportPeaksFomResourceWorkflow.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportPeaksFomResourceWorkflow.java index aebb6f456e..f30c8546b2 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportPeaksFomResourceWorkflow.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/backgroundruns/ImportPeaksFomResourceWorkflow.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.backgroundruns; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/GlobalConfig.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/GlobalConfig.java index a505e24e0c..462070102d 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/GlobalConfig.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/GlobalConfig.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.configuration; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/SecurityConfig.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/SecurityConfig.java index 6a11368489..e37c27b486 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/SecurityConfig.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/SecurityConfig.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.configuration; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/NitriteNoSqlProjectConfig.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/NitriteNoSqlProjectConfig.java index 3b6f90e065..13c7144fb8 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/NitriteNoSqlProjectConfig.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/NitriteNoSqlProjectConfig.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.configuration.project; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/SiriusProjectSpaceConfig.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/SiriusProjectSpaceConfig.java index cbb74ba7d3..4cbb8b8768 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/SiriusProjectSpaceConfig.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/configuration/project/SiriusProjectSpaceConfig.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.configuration.project; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/CompoundController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/CompoundController.java index de0e62cc17..5a29fb2916 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/CompoundController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/CompoundController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiController.java index ede5305651..9aeef95390 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerAdvanced.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerAdvanced.java index be498302a3..5ff0845fa7 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerAdvanced.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerAdvanced.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerBasic.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerBasic.java index eeffe88ac6..cc50250a12 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerBasic.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/GuiControllerBasic.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/InfoController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/InfoController.java index 9bd58a2b10..7dbb52bea6 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/InfoController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/InfoController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/JobController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/JobController.java index dceeefaf9d..5700c83d6f 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/JobController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/JobController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/LoginController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/LoginController.java index 45080d5804..a4e023200a 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/LoginController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/LoginController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/ProjectController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/ProjectController.java index 4f51d59873..51f23de976 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/ProjectController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/ProjectController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/RedirectController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/RedirectController.java index 37f05d641c..0335d5fc52 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/RedirectController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/RedirectController.java @@ -3,25 +3,6 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * This file is part of the SIRIUS Software for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer, Marvin Meusel and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * * This program is free software; you can redistribute it and/or diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SearchableDatabaseController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SearchableDatabaseController.java index 59bdf9eb1a..e1f632bd18 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SearchableDatabaseController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SearchableDatabaseController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SseController.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SseController.java index c76a0a4d78..19b2cb3f47 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SseController.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/controller/SseController.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.controller; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/MultipartInputResource.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/MultipartInputResource.java index 6ca51636bd..ae53904406 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/MultipartInputResource.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/MultipartInputResource.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/BinaryFingerprint.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/BinaryFingerprint.java index a8a0d4f58d..1b194f7a87 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/BinaryFingerprint.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/BinaryFingerprint.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusLevels.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusLevels.java index a3294f344a..c971534164 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusLevels.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusLevels.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusPrediction.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusPrediction.java index ca8338fdd0..14a7c8b04a 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusPrediction.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CanopusPrediction.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClass.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClass.java index f4cfaa08ce..d20d33bea8 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClass.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClass.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClasses.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClasses.java index 14d4057daa..ab05d2e1c0 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClasses.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/CompoundClasses.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotations.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotations.java index c9207f93e8..90a50e61a2 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotations.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotations.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsCSI.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsCSI.java index 7bc667b7b0..21e2ab41ac 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsCSI.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsCSI.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsDeNovo.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsDeNovo.java index 6cb48773c3..56e97febdf 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsDeNovo.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/ConsensusAnnotationsDeNovo.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FormulaCandidate.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FormulaCandidate.java index 8005022f5c..b03b322fb4 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FormulaCandidate.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FormulaCandidate.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentNode.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentNode.java index fe7bdfc8ef..169eb0ae8c 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentNode.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentNode.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentationTree.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentationTree.java index 5a5c7230af..1ffea8d0b2 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentationTree.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/FragmentationTree.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LipidAnnotation.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LipidAnnotation.java index ac5d251a8f..790ee849cd 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LipidAnnotation.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LipidAnnotation.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LossEdge.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LossEdge.java index c196b8260f..a504ad2167 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LossEdge.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/LossEdge.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/SpectralLibraryMatch.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/SpectralLibraryMatch.java index 9d384e452d..f2435d1f0a 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/SpectralLibraryMatch.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/SpectralLibraryMatch.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidate.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidate.java index 2ed3edd1e9..13556a54c1 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidate.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidate.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateFormula.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateFormula.java index 7f050711b1..7e8e50d84e 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateFormula.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateFormula.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateScored.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateScored.java index 292831c298..b22da20447 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateScored.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/annotations/StructureCandidateScored.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/Compound.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/Compound.java index 1cd95880f2..3d19d430ee 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/Compound.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/Compound.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compounds; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/CompoundImport.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/CompoundImport.java index 87f336f902..4f23c4bb5a 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/CompoundImport.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compounds/CompoundImport.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compounds; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractImportSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractImportSubmission.java index 86d9357200..64f9214817 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractImportSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractImportSubmission.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractSubmission.java index 0be25827c4..376baee496 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/AbstractSubmission.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/CommandSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/CommandSubmission.java index 498b47ddd0..80cbfd08b5 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/CommandSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/CommandSubmission.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportJobSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportJobSubmission.java index 2d7c7e6f31..979963bf58 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportJobSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportJobSubmission.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportSubmission.java index 02c4fb24cc..f5b1b096aa 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/DatabaseImportSubmission.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportFormat.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportFormat.java index f5d9542918..8bf98c94c1 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportFormat.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportFormat.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportLocalFilesSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportLocalFilesSubmission.java index 1f5e6b0b52..2dc2a7c92e 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportLocalFilesSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportLocalFilesSubmission.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportMultipartFilesSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportMultipartFilesSubmission.java index 5c36181b88..99ad60eeab 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportMultipartFilesSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportMultipartFilesSubmission.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportStringSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportStringSubmission.java index b55a460390..de8ed5620d 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportStringSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/ImportStringSubmission.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/Job.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/Job.java index 89d0254c44..f5a12f0d49 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/Job.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/Job.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobProgress.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobProgress.java index c11fb901bc..9ea8902c2a 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobProgress.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobProgress.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobSubmission.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobSubmission.java index 775c31dc4e..f808d1f8fb 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobSubmission.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/JobSubmission.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/NullCheckMapBuilder.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/NullCheckMapBuilder.java index 91002d14a4..5d37ba866f 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/NullCheckMapBuilder.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/NullCheckMapBuilder.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Canopus.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Canopus.java index a53bbc8b97..ddcaccc5c0 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Canopus.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Canopus.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/FingerprintPrediction.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/FingerprintPrediction.java index ee5d66e22a..7077b91b1e 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/FingerprintPrediction.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/FingerprintPrediction.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/MsNovelist.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/MsNovelist.java index 26a982fc3d..dd0e66c7b0 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/MsNovelist.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/MsNovelist.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Sirius.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Sirius.java index b3beeccf05..6fecace963 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Sirius.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Sirius.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/SpectralLibrarySearch.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/SpectralLibrarySearch.java index 0a06c1d364..167ac865e4 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/SpectralLibrarySearch.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/SpectralLibrarySearch.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/StructureDbSearch.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/StructureDbSearch.java index c328f4a81d..2807dcc36c 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/StructureDbSearch.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/StructureDbSearch.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Tool.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Tool.java index f183724158..945a52675d 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Tool.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Tool.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Zodiac.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Zodiac.java index ae87493ac5..c68c092086 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Zodiac.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/compute/tools/Zodiac.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.compute.tools; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabase.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabase.java index 92cfc6f4c6..7b5e83b925 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabase.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabase.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.databases; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabaseParameters.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabaseParameters.java index 46c21f873c..442d0bf6bf 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabaseParameters.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabaseParameters.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.databases; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabases.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabases.java index 7ce61256d6..a615a43ab1 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabases.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/databases/SearchableDatabases.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.databases; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/BackgroundComputationsStateEvent.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/BackgroundComputationsStateEvent.java index 8b6248a589..6cf3fa1497 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/BackgroundComputationsStateEvent.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/BackgroundComputationsStateEvent.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.events; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ProjectChangeEvent.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ProjectChangeEvent.java index d703aad108..7862972e98 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ProjectChangeEvent.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ProjectChangeEvent.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.events; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvent.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvent.java index 979c725bf2..6f8b5863e3 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvent.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvent.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.events; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEventImpl.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEventImpl.java index 34a1fc78c8..0fcd976809 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEventImpl.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEventImpl.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.events; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvents.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvents.java index 036766ad80..90af68dfbc 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvents.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/events/ServerEvents.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.events; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AlignedFeatureQuality.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AlignedFeatureQuality.java index e4ec4d45db..c5648e73b2 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AlignedFeatureQuality.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AlignedFeatureQuality.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.features; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AnnotatedMsMsData.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AnnotatedMsMsData.java index 12fe94f7ae..5cf136ae8f 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AnnotatedMsMsData.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/AnnotatedMsMsData.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.features; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImport.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImport.java index 8050b63c4a..a98d5a76b2 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImport.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImport.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.features; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImports.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImports.java index 970708bd14..15c6bec35c 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImports.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/features/FeatureImports.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.features; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiInfo.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiInfo.java index 957a0c7803..eada837354 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiInfo.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiInfo.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.gui; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiParameters.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiParameters.java index 9bb92ab112..b3b5dd3d6f 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiParameters.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiParameters.java @@ -3,59 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * - * This file is part of the SIRIUS library for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * - * This file is part of the SIRIUS library for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.gui; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiResultTab.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiResultTab.java index c6b81f2560..96907dfb8c 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiResultTab.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/gui/GuiResultTab.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.gui; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/Info.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/Info.java index 2a800377e0..4fae4cafd7 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/Info.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/Info.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.info; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/LicenseInfo.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/LicenseInfo.java index e07b5030fc..89b54b8bb6 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/LicenseInfo.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/info/LicenseInfo.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.info; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountCredentials.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountCredentials.java index d69ccb5b0b..65e6191265 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountCredentials.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountCredentials.java @@ -3,44 +3,23 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * - * This file is part of the SIRIUS library for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.login; -import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import io.swagger.v3.oas.annotations.media.Schema; import lombok.Getter; import lombok.Setter; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountInfo.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountInfo.java index f24b8a7e4f..91d69e1892 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountInfo.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/AccountInfo.java @@ -3,39 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * - * This file is part of the SIRIUS library for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.login; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/Subscription.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/Subscription.java index 146677f773..617f3e9b2a 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/Subscription.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/login/Subscription.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.login; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ImportResult.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ImportResult.java index e9fb8ddb97..f32378c7c5 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ImportResult.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ImportResult.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.projects; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ProjectInfo.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ProjectInfo.java index c4eb2cf818..290df0960e 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ProjectInfo.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/projects/ProjectInfo.java @@ -3,25 +3,6 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * This file is part of the SIRIUS Software for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer, Marvin Meusel and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * * This program is free software; you can redistribute it and/or diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedPeak.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedPeak.java index e277043b65..40c4760829 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedPeak.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedPeak.java @@ -3,39 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * - * This file is part of the SIRIUS library for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.spectra; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedSpectrum.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedSpectrum.java index 3aed668a90..7d667c2861 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedSpectrum.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/AnnotatedSpectrum.java @@ -3,25 +3,6 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. - * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either - * version 3 of the License, or (at your option) any later version. - * - * This library is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see - */ - -/* - * This file is part of the SIRIUS Software for analyzing MS and MS/MS data - * - * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer, Marvin Meusel and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * * This program is free software; you can redistribute it and/or @@ -43,7 +24,6 @@ import com.fasterxml.jackson.annotation.JsonInclude; import de.unijena.bioinf.ChemistryBase.ms.Normalization; import de.unijena.bioinf.ChemistryBase.ms.Peak; -import de.unijena.bioinf.ChemistryBase.ms.SimplePeak; import de.unijena.bioinf.ChemistryBase.ms.Spectrum; import de.unijena.bioinf.ChemistryBase.ms.utils.Spectrums; import io.swagger.v3.oas.annotations.media.Schema; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/ParentPeak.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/ParentPeak.java index 3378b76e66..89e71c7b00 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/ParentPeak.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/ParentPeak.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.spectra; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/SpectrumAnnotation.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/SpectrumAnnotation.java index 08e4a1f6be..06a599620b 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/SpectrumAnnotation.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/SpectrumAnnotation.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.spectra; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/Spectrums.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/Spectrums.java index 1c59a62aec..cdb30f8b2e 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/Spectrums.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/model/spectra/Spectrums.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.model.spectra; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/annotations/AnnotationUtils.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/annotations/AnnotationUtils.java index bb5a0649f2..158a669cb8 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/annotations/AnnotationUtils.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/annotations/AnnotationUtils.java @@ -3,19 +3,19 @@ * This file is part of the SIRIUS library for analyzing MS and MS/MS data * * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, - * Chair of Bioinformatics, Friedrich-Schilller University. + * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.annotations; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeService.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeService.java index eb72f8a680..796699589f 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeService.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeService.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeServiceImpl.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeServiceImpl.java index da41cf3782..547503a09d 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeServiceImpl.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/compute/ComputeServiceImpl.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.compute; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbService.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbService.java index 7b8f321241..8a6bf4805b 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbService.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbService.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.databases; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbServiceImpl.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbServiceImpl.java index f88361666d..449c96ee89 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbServiceImpl.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/databases/ChemDbServiceImpl.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.databases; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/EventService.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/EventService.java index 78136350cd..731ec6b2d5 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/EventService.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/EventService.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.events; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/SseEventService.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/SseEventService.java index 64b2f3410d..69a6f01b67 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/SseEventService.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/events/SseEventService.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.events; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiService.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiService.java index bedacb79d6..6217a18ca6 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiService.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiService.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiServiceImpl.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiServiceImpl.java index 482c38a6fe..97d6e29c01 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiServiceImpl.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/gui/GuiServiceImpl.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.gui; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/info/ConnectionChecker.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/info/ConnectionChecker.java index 44ffdcc6ab..2c23749af2 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/info/ConnectionChecker.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/info/ConnectionChecker.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.info; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/Project.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/Project.java index 2f79e54b1f..1d1473a4f9 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/Project.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/Project.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.projects; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectSpaceManagerProvider.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectSpaceManagerProvider.java index cd59300c33..c9dba1f3d2 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectSpaceManagerProvider.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectSpaceManagerProvider.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.projects; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectsProvider.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectsProvider.java index 30c5ac7c73..e6bca79826 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectsProvider.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/ProjectsProvider.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.projects; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceImpl.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceImpl.java index 530524c834..63702d59ed 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceImpl.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceImpl.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.projects; diff --git a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceProviderImpl.java b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceProviderImpl.java index 3ae1f4424a..e5bb56b588 100644 --- a/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceProviderImpl.java +++ b/sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/SiriusProjectSpaceProviderImpl.java @@ -5,17 +5,17 @@ * Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker, * Chair of Bioinformatics, Friedrich-Schiller University. * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public - * License as published by the Free Software Foundation; either + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation; either * version 3 of the License, or (at your option) any later version. * - * This library is distributed in the hope that it will be useful, + * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. + * Affero General Public License for more details. * - * You should have received a copy of the GNU Lesser General Public License along with SIRIUS. If not, see + * You should have received a copy of the GNU Affero General Public License along with SIRIUS. If not, see */ package de.unijena.bioinf.ms.middleware.service.projects;