From 6dcc94c689a10cc19d8b8c5a194f96f7e1555c95 Mon Sep 17 00:00:00 2001 From: fleisch Date: Sat, 28 Sep 2024 01:39:53 +0200 Subject: [PATCH] rebuild sdk, adapted ignore config --- .../.openapi-generator-ignore | 2 +- .../.openapi-generator/FILES | 338 +++++++++++------- sirius-sdk/sirius-sdk.openapi/README.md | 14 +- .../sirius-sdk.openapi/docs/ActuatorApi.md | 2 - .../sirius-sdk.openapi/docs/CompoundsApi.md | 6 - .../docs/ExperimentalApi.md | 1 - .../sirius-sdk.openapi/docs/FeaturesApi.md | 35 -- sirius-sdk/sirius-sdk.openapi/docs/GuiApi.md | 3 - sirius-sdk/sirius-sdk.openapi/docs/InfoApi.md | 2 - sirius-sdk/sirius-sdk.openapi/docs/JobsApi.md | 14 - .../docs/LoginAndAccountApi.md | 9 - .../sirius-sdk.openapi/docs/ProjectsApi.md | 17 - .../docs/SearchableDatabasesApi.md | 10 - 13 files changed, 221 insertions(+), 232 deletions(-) diff --git a/sirius-sdk/sirius-sdk.openapi/.openapi-generator-ignore b/sirius-sdk/sirius-sdk.openapi/.openapi-generator-ignore index 917c3280ba..69c064bd95 100644 --- a/sirius-sdk/sirius-sdk.openapi/.openapi-generator-ignore +++ b/sirius-sdk/sirius-sdk.openapi/.openapi-generator-ignore @@ -36,5 +36,5 @@ gradlew.bat pom.xml settings.gradle build.gradle -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/model/** +src/test/java/io/sirius/ms/sdk/model/** diff --git a/sirius-sdk/sirius-sdk.openapi/.openapi-generator/FILES b/sirius-sdk/sirius-sdk.openapi/.openapi-generator/FILES index 6da7287f65..2a1c52847a 100644 --- a/sirius-sdk/sirius-sdk.openapi/.openapi-generator/FILES +++ b/sirius-sdk/sirius-sdk.openapi/.openapi-generator/FILES @@ -105,128 +105,216 @@ docs/UseHeuristic.md docs/Zodiac.md docs/ZodiacEdgeFilterThresholds.md docs/ZodiacEpochs.md -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/ActuatorApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/CompoundsApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/ExperimentalApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/FeaturesApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/GuiApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/InfoApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/JobsApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/LoginAndAccountApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/ProjectsApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/api/SearchableDatabasesApi.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/ApiClient.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/RFC3339DateFormat.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/ServerConfiguration.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/ServerVariable.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/StringUtil.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/auth/ApiKeyAuth.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/auth/Authentication.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/auth/HttpBasicAuth.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/client/auth/HttpBearerAuth.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AccountCredentials.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AccountInfo.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AlignedFeature.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AlignedFeatureOptField.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AlignedFeatureQuality.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AnnotatedMsMsData.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AnnotatedPeak.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/AnnotatedSpectrum.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Annotation.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Axes.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/BackgroundComputationsStateEvent.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/BasicSpectrum.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/BinaryFingerprint.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Canopus.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/CanopusPrediction.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Category.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/CommandSubmission.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Compound.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/CompoundClass.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/CompoundClassType.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/CompoundClasses.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/CompoundImport.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/CompoundOptField.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ConfidenceMode.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ConnectionCheck.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ConnectionError.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ConsensusAnnotationsCSI.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ConsensusAnnotationsDeNovo.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ConsensusCriterionCSI.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ConsensusCriterionDeNovo.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/DBLink.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/DataQuality.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Deviation.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/FeatureAnnotations.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/FeatureImport.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/FingerprintPrediction.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/FormulaCandidate.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/FormulaCandidateOptField.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/FragmentNode.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/FragmentationTree.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/GuiInfo.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ImportResult.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Info.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/InstrumentProfile.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/IsotopePatternAnnotation.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Item.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Job.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/JobOptField.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/JobProgress.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/JobSubmission.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/LcmsSubmissionParameters.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/LicenseInfo.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/LipidAnnotation.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/LossEdge.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/MsData.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/MsNovelist.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageAlignedFeature.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageCompound.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageFormulaCandidate.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageJob.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageSpectralLibraryMatch.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageStructureCandidateFormula.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageStructureCandidateScored.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PageableObject.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ParentPeak.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/PeakAnnotation.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ProjectChangeEvent.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ProjectInfo.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ProjectInfoOptField.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/QuantificationTable.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SearchableDatabase.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SearchableDatabaseParameters.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SimplePeak.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Sirius.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SortObject.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SpectralLibraryMatch.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SpectralLibraryMatchOptField.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SpectralLibraryMatchSummary.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SpectralLibrarySearch.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SpectralMatchingType.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SpectrumAnnotation.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/StructureCandidate.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/StructureCandidateFormula.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/StructureCandidateOptField.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/StructureCandidateScored.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/StructureDbSearch.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Subscription.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/SubscriptionConsumables.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Term.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Timeout.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Trace.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/TraceSet.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/UseHeuristic.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/Zodiac.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ZodiacEdgeFilterThresholds.java -src/main/java/de/unijena/bioinf/ms/nightsky/sdk/model/ZodiacEpochs.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/ActuatorApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/CompoundsApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/ExperimentalApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/FeaturesApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/GuiApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/InfoApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/JobsApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/LoginAndAccountApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/ProjectsApiTest.java -src/test/java/de/unijena/bioinf/ms/nightsky/sdk/api/SearchableDatabasesApiTest.java +src/main/java/io/sirius/ms/sdk/api/ActuatorApi.java +src/main/java/io/sirius/ms/sdk/api/CompoundsApi.java +src/main/java/io/sirius/ms/sdk/api/ExperimentalApi.java +src/main/java/io/sirius/ms/sdk/api/FeaturesApi.java +src/main/java/io/sirius/ms/sdk/api/GuiApi.java +src/main/java/io/sirius/ms/sdk/api/InfoApi.java +src/main/java/io/sirius/ms/sdk/api/JobsApi.java +src/main/java/io/sirius/ms/sdk/api/LoginAndAccountApi.java +src/main/java/io/sirius/ms/sdk/api/ProjectsApi.java +src/main/java/io/sirius/ms/sdk/api/SearchableDatabasesApi.java +src/main/java/io/sirius/ms/sdk/client/ApiClient.java +src/main/java/io/sirius/ms/sdk/client/RFC3339DateFormat.java +src/main/java/io/sirius/ms/sdk/client/ServerConfiguration.java +src/main/java/io/sirius/ms/sdk/client/ServerVariable.java +src/main/java/io/sirius/ms/sdk/client/StringUtil.java +src/main/java/io/sirius/ms/sdk/client/auth/ApiKeyAuth.java +src/main/java/io/sirius/ms/sdk/client/auth/Authentication.java +src/main/java/io/sirius/ms/sdk/client/auth/HttpBasicAuth.java +src/main/java/io/sirius/ms/sdk/client/auth/HttpBearerAuth.java +src/main/java/io/sirius/ms/sdk/model/AccountCredentials.java +src/main/java/io/sirius/ms/sdk/model/AccountInfo.java +src/main/java/io/sirius/ms/sdk/model/AlignedFeature.java +src/main/java/io/sirius/ms/sdk/model/AlignedFeatureOptField.java +src/main/java/io/sirius/ms/sdk/model/AlignedFeatureQuality.java +src/main/java/io/sirius/ms/sdk/model/AnnotatedMsMsData.java +src/main/java/io/sirius/ms/sdk/model/AnnotatedPeak.java +src/main/java/io/sirius/ms/sdk/model/AnnotatedSpectrum.java +src/main/java/io/sirius/ms/sdk/model/Annotation.java +src/main/java/io/sirius/ms/sdk/model/Axes.java +src/main/java/io/sirius/ms/sdk/model/BackgroundComputationsStateEvent.java +src/main/java/io/sirius/ms/sdk/model/BasicSpectrum.java +src/main/java/io/sirius/ms/sdk/model/BinaryFingerprint.java +src/main/java/io/sirius/ms/sdk/model/Canopus.java +src/main/java/io/sirius/ms/sdk/model/CanopusPrediction.java +src/main/java/io/sirius/ms/sdk/model/Category.java +src/main/java/io/sirius/ms/sdk/model/CommandSubmission.java +src/main/java/io/sirius/ms/sdk/model/Compound.java +src/main/java/io/sirius/ms/sdk/model/CompoundClass.java +src/main/java/io/sirius/ms/sdk/model/CompoundClassType.java +src/main/java/io/sirius/ms/sdk/model/CompoundClasses.java +src/main/java/io/sirius/ms/sdk/model/CompoundImport.java +src/main/java/io/sirius/ms/sdk/model/CompoundOptField.java +src/main/java/io/sirius/ms/sdk/model/ConfidenceMode.java +src/main/java/io/sirius/ms/sdk/model/ConnectionCheck.java +src/main/java/io/sirius/ms/sdk/model/ConnectionError.java +src/main/java/io/sirius/ms/sdk/model/ConsensusAnnotationsCSI.java +src/main/java/io/sirius/ms/sdk/model/ConsensusAnnotationsDeNovo.java +src/main/java/io/sirius/ms/sdk/model/ConsensusCriterionCSI.java +src/main/java/io/sirius/ms/sdk/model/ConsensusCriterionDeNovo.java +src/main/java/io/sirius/ms/sdk/model/DBLink.java +src/main/java/io/sirius/ms/sdk/model/DataQuality.java +src/main/java/io/sirius/ms/sdk/model/Deviation.java +src/main/java/io/sirius/ms/sdk/model/FeatureAnnotations.java +src/main/java/io/sirius/ms/sdk/model/FeatureImport.java +src/main/java/io/sirius/ms/sdk/model/FingerprintPrediction.java +src/main/java/io/sirius/ms/sdk/model/FormulaCandidate.java +src/main/java/io/sirius/ms/sdk/model/FormulaCandidateOptField.java +src/main/java/io/sirius/ms/sdk/model/FragmentNode.java +src/main/java/io/sirius/ms/sdk/model/FragmentationTree.java +src/main/java/io/sirius/ms/sdk/model/GuiInfo.java +src/main/java/io/sirius/ms/sdk/model/ImportResult.java +src/main/java/io/sirius/ms/sdk/model/Info.java +src/main/java/io/sirius/ms/sdk/model/InstrumentProfile.java +src/main/java/io/sirius/ms/sdk/model/IsotopePatternAnnotation.java +src/main/java/io/sirius/ms/sdk/model/Item.java +src/main/java/io/sirius/ms/sdk/model/Job.java +src/main/java/io/sirius/ms/sdk/model/JobOptField.java +src/main/java/io/sirius/ms/sdk/model/JobProgress.java +src/main/java/io/sirius/ms/sdk/model/JobSubmission.java +src/main/java/io/sirius/ms/sdk/model/LcmsSubmissionParameters.java +src/main/java/io/sirius/ms/sdk/model/LicenseInfo.java +src/main/java/io/sirius/ms/sdk/model/LipidAnnotation.java +src/main/java/io/sirius/ms/sdk/model/LossEdge.java +src/main/java/io/sirius/ms/sdk/model/MsData.java +src/main/java/io/sirius/ms/sdk/model/MsNovelist.java +src/main/java/io/sirius/ms/sdk/model/PageAlignedFeature.java +src/main/java/io/sirius/ms/sdk/model/PageCompound.java +src/main/java/io/sirius/ms/sdk/model/PageFormulaCandidate.java +src/main/java/io/sirius/ms/sdk/model/PageJob.java +src/main/java/io/sirius/ms/sdk/model/PageSpectralLibraryMatch.java +src/main/java/io/sirius/ms/sdk/model/PageStructureCandidateFormula.java +src/main/java/io/sirius/ms/sdk/model/PageStructureCandidateScored.java +src/main/java/io/sirius/ms/sdk/model/PageableObject.java +src/main/java/io/sirius/ms/sdk/model/ParentPeak.java +src/main/java/io/sirius/ms/sdk/model/PeakAnnotation.java +src/main/java/io/sirius/ms/sdk/model/ProjectChangeEvent.java +src/main/java/io/sirius/ms/sdk/model/ProjectInfo.java +src/main/java/io/sirius/ms/sdk/model/ProjectInfoOptField.java +src/main/java/io/sirius/ms/sdk/model/QuantificationTable.java +src/main/java/io/sirius/ms/sdk/model/SearchableDatabase.java +src/main/java/io/sirius/ms/sdk/model/SearchableDatabaseParameters.java +src/main/java/io/sirius/ms/sdk/model/SimplePeak.java +src/main/java/io/sirius/ms/sdk/model/Sirius.java +src/main/java/io/sirius/ms/sdk/model/SortObject.java +src/main/java/io/sirius/ms/sdk/model/SpectralLibraryMatch.java +src/main/java/io/sirius/ms/sdk/model/SpectralLibraryMatchOptField.java +src/main/java/io/sirius/ms/sdk/model/SpectralLibraryMatchSummary.java +src/main/java/io/sirius/ms/sdk/model/SpectralLibrarySearch.java +src/main/java/io/sirius/ms/sdk/model/SpectralMatchingType.java +src/main/java/io/sirius/ms/sdk/model/SpectrumAnnotation.java +src/main/java/io/sirius/ms/sdk/model/StructureCandidate.java +src/main/java/io/sirius/ms/sdk/model/StructureCandidateFormula.java +src/main/java/io/sirius/ms/sdk/model/StructureCandidateOptField.java +src/main/java/io/sirius/ms/sdk/model/StructureCandidateScored.java +src/main/java/io/sirius/ms/sdk/model/StructureDbSearch.java +src/main/java/io/sirius/ms/sdk/model/Subscription.java +src/main/java/io/sirius/ms/sdk/model/SubscriptionConsumables.java +src/main/java/io/sirius/ms/sdk/model/Term.java +src/main/java/io/sirius/ms/sdk/model/Timeout.java +src/main/java/io/sirius/ms/sdk/model/Trace.java +src/main/java/io/sirius/ms/sdk/model/TraceSet.java +src/main/java/io/sirius/ms/sdk/model/UseHeuristic.java +src/main/java/io/sirius/ms/sdk/model/Zodiac.java +src/main/java/io/sirius/ms/sdk/model/ZodiacEdgeFilterThresholds.java +src/main/java/io/sirius/ms/sdk/model/ZodiacEpochs.java +src/test/java/io/sirius/ms/sdk/api/ExperimentalApiTest.java +src/test/java/io/sirius/ms/sdk/api/GuiApiTest.java +src/test/java/io/sirius/ms/sdk/model/AccountCredentialsTest.java +src/test/java/io/sirius/ms/sdk/model/AccountInfoTest.java +src/test/java/io/sirius/ms/sdk/model/AlignedFeatureOptFieldTest.java +src/test/java/io/sirius/ms/sdk/model/AlignedFeatureQualityTest.java +src/test/java/io/sirius/ms/sdk/model/AlignedFeatureTest.java +src/test/java/io/sirius/ms/sdk/model/AnnotatedMsMsDataTest.java +src/test/java/io/sirius/ms/sdk/model/AnnotatedPeakTest.java +src/test/java/io/sirius/ms/sdk/model/AnnotatedSpectrumTest.java +src/test/java/io/sirius/ms/sdk/model/AnnotationTest.java +src/test/java/io/sirius/ms/sdk/model/AxesTest.java +src/test/java/io/sirius/ms/sdk/model/BackgroundComputationsStateEventTest.java +src/test/java/io/sirius/ms/sdk/model/BasicSpectrumTest.java +src/test/java/io/sirius/ms/sdk/model/BinaryFingerprintTest.java +src/test/java/io/sirius/ms/sdk/model/CanopusPredictionTest.java +src/test/java/io/sirius/ms/sdk/model/CanopusTest.java +src/test/java/io/sirius/ms/sdk/model/CategoryTest.java +src/test/java/io/sirius/ms/sdk/model/CommandSubmissionTest.java +src/test/java/io/sirius/ms/sdk/model/CompoundClassTest.java +src/test/java/io/sirius/ms/sdk/model/CompoundClassTypeTest.java +src/test/java/io/sirius/ms/sdk/model/CompoundClassesTest.java +src/test/java/io/sirius/ms/sdk/model/CompoundImportTest.java +src/test/java/io/sirius/ms/sdk/model/CompoundOptFieldTest.java +src/test/java/io/sirius/ms/sdk/model/CompoundTest.java +src/test/java/io/sirius/ms/sdk/model/ConfidenceModeTest.java +src/test/java/io/sirius/ms/sdk/model/ConnectionCheckTest.java +src/test/java/io/sirius/ms/sdk/model/ConnectionErrorTest.java +src/test/java/io/sirius/ms/sdk/model/ConsensusAnnotationsCSITest.java +src/test/java/io/sirius/ms/sdk/model/ConsensusAnnotationsDeNovoTest.java +src/test/java/io/sirius/ms/sdk/model/ConsensusCriterionCSITest.java +src/test/java/io/sirius/ms/sdk/model/ConsensusCriterionDeNovoTest.java +src/test/java/io/sirius/ms/sdk/model/DBLinkTest.java +src/test/java/io/sirius/ms/sdk/model/DataQualityTest.java +src/test/java/io/sirius/ms/sdk/model/DeviationTest.java +src/test/java/io/sirius/ms/sdk/model/FeatureAnnotationsTest.java +src/test/java/io/sirius/ms/sdk/model/FeatureImportTest.java +src/test/java/io/sirius/ms/sdk/model/FingerprintPredictionTest.java +src/test/java/io/sirius/ms/sdk/model/FormulaCandidateOptFieldTest.java +src/test/java/io/sirius/ms/sdk/model/FormulaCandidateTest.java +src/test/java/io/sirius/ms/sdk/model/FragmentNodeTest.java +src/test/java/io/sirius/ms/sdk/model/FragmentationTreeTest.java +src/test/java/io/sirius/ms/sdk/model/GuiInfoTest.java +src/test/java/io/sirius/ms/sdk/model/ImportResultTest.java +src/test/java/io/sirius/ms/sdk/model/InfoTest.java +src/test/java/io/sirius/ms/sdk/model/InstrumentProfileTest.java +src/test/java/io/sirius/ms/sdk/model/IsotopePatternAnnotationTest.java +src/test/java/io/sirius/ms/sdk/model/ItemTest.java +src/test/java/io/sirius/ms/sdk/model/JobOptFieldTest.java +src/test/java/io/sirius/ms/sdk/model/JobProgressTest.java +src/test/java/io/sirius/ms/sdk/model/JobSubmissionTest.java +src/test/java/io/sirius/ms/sdk/model/JobTest.java +src/test/java/io/sirius/ms/sdk/model/LcmsSubmissionParametersTest.java +src/test/java/io/sirius/ms/sdk/model/LicenseInfoTest.java +src/test/java/io/sirius/ms/sdk/model/LipidAnnotationTest.java +src/test/java/io/sirius/ms/sdk/model/LossEdgeTest.java +src/test/java/io/sirius/ms/sdk/model/MsDataTest.java +src/test/java/io/sirius/ms/sdk/model/MsNovelistTest.java +src/test/java/io/sirius/ms/sdk/model/PageAlignedFeatureTest.java +src/test/java/io/sirius/ms/sdk/model/PageCompoundTest.java +src/test/java/io/sirius/ms/sdk/model/PageFormulaCandidateTest.java +src/test/java/io/sirius/ms/sdk/model/PageJobTest.java +src/test/java/io/sirius/ms/sdk/model/PageSpectralLibraryMatchTest.java +src/test/java/io/sirius/ms/sdk/model/PageStructureCandidateFormulaTest.java +src/test/java/io/sirius/ms/sdk/model/PageStructureCandidateScoredTest.java +src/test/java/io/sirius/ms/sdk/model/PageableObjectTest.java +src/test/java/io/sirius/ms/sdk/model/ParentPeakTest.java +src/test/java/io/sirius/ms/sdk/model/PeakAnnotationTest.java +src/test/java/io/sirius/ms/sdk/model/ProjectChangeEventTest.java +src/test/java/io/sirius/ms/sdk/model/ProjectInfoOptFieldTest.java +src/test/java/io/sirius/ms/sdk/model/ProjectInfoTest.java +src/test/java/io/sirius/ms/sdk/model/QuantificationTableTest.java +src/test/java/io/sirius/ms/sdk/model/SearchableDatabaseParametersTest.java +src/test/java/io/sirius/ms/sdk/model/SearchableDatabaseTest.java +src/test/java/io/sirius/ms/sdk/model/SimplePeakTest.java +src/test/java/io/sirius/ms/sdk/model/SiriusTest.java +src/test/java/io/sirius/ms/sdk/model/SortObjectTest.java +src/test/java/io/sirius/ms/sdk/model/SpectralLibraryMatchOptFieldTest.java +src/test/java/io/sirius/ms/sdk/model/SpectralLibraryMatchSummaryTest.java +src/test/java/io/sirius/ms/sdk/model/SpectralLibraryMatchTest.java +src/test/java/io/sirius/ms/sdk/model/SpectralLibrarySearchTest.java +src/test/java/io/sirius/ms/sdk/model/SpectralMatchingTypeTest.java +src/test/java/io/sirius/ms/sdk/model/SpectrumAnnotationTest.java +src/test/java/io/sirius/ms/sdk/model/StructureCandidateFormulaTest.java +src/test/java/io/sirius/ms/sdk/model/StructureCandidateOptFieldTest.java +src/test/java/io/sirius/ms/sdk/model/StructureCandidateScoredTest.java +src/test/java/io/sirius/ms/sdk/model/StructureCandidateTest.java +src/test/java/io/sirius/ms/sdk/model/StructureDbSearchTest.java +src/test/java/io/sirius/ms/sdk/model/SubscriptionConsumablesTest.java +src/test/java/io/sirius/ms/sdk/model/SubscriptionTest.java +src/test/java/io/sirius/ms/sdk/model/TermTest.java +src/test/java/io/sirius/ms/sdk/model/TimeoutTest.java +src/test/java/io/sirius/ms/sdk/model/TraceSetTest.java +src/test/java/io/sirius/ms/sdk/model/TraceTest.java +src/test/java/io/sirius/ms/sdk/model/UseHeuristicTest.java +src/test/java/io/sirius/ms/sdk/model/ZodiacEdgeFilterThresholdsTest.java +src/test/java/io/sirius/ms/sdk/model/ZodiacEpochsTest.java +src/test/java/io/sirius/ms/sdk/model/ZodiacTest.java diff --git a/sirius-sdk/sirius-sdk.openapi/README.md b/sirius-sdk/sirius-sdk.openapi/README.md index f2de495a91..540455674c 100644 --- a/sirius-sdk/sirius-sdk.openapi/README.md +++ b/sirius-sdk/sirius-sdk.openapi/README.md @@ -1,4 +1,4 @@ -# sirius_nightsky_sdk +# sirius-sdk.openapi SIRIUS Nightsky API @@ -40,8 +40,8 @@ Add this dependency to your project's POM: ```xml - de.unijena.bioinf.ms - sirius_nightsky_sdk + io.sirius-ms + sirius-sdk.openapi 6.0.6-SNAPSHOT compile @@ -53,12 +53,12 @@ Add this dependency to your project's build file: ```groovy repositories { - mavenCentral() // Needed if the 'sirius_nightsky_sdk' jar has been published to maven central. - mavenLocal() // Needed if the 'sirius_nightsky_sdk' jar has been published to the local maven repo. + mavenCentral() // Needed if the 'sirius-sdk.openapi' jar has been published to maven central. + mavenLocal() // Needed if the 'sirius-sdk.openapi' jar has been published to the local maven repo. } dependencies { - implementation "de.unijena.bioinf.ms:sirius_nightsky_sdk:6.0.6-SNAPSHOT" + implementation "io.sirius-ms:sirius-sdk.openapi:6.0.6-SNAPSHOT" } ``` @@ -72,7 +72,7 @@ mvn clean package Then manually install the following JARs: -- `target/sirius_nightsky_sdk-6.0.6-SNAPSHOT.jar` +- `target/sirius-sdk.openapi-6.0.6-SNAPSHOT.jar` - `target/lib/*.jar` ## Getting Started diff --git a/sirius-sdk/sirius-sdk.openapi/docs/ActuatorApi.md b/sirius-sdk/sirius-sdk.openapi/docs/ActuatorApi.md index 6633171b7e..dd9e321bc3 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/ActuatorApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/ActuatorApi.md @@ -19,7 +19,6 @@ Actuator web endpoint 'health' ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -80,7 +79,6 @@ Actuator web endpoint 'shutdown' ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/CompoundsApi.md b/sirius-sdk/sirius-sdk.openapi/docs/CompoundsApi.md index f1a1656b2e..f080c84b39 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/CompoundsApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/CompoundsApi.md @@ -25,7 +25,6 @@ Import Compounds and its contained features. Compounds and Features must not exi ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -100,7 +99,6 @@ Delete compound (group of ion identities) with the given identifier (and the inc ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -168,7 +166,6 @@ Get compound (group of ion identities) with the given identifier from the specif ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -239,7 +236,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -310,7 +306,6 @@ List of all available compounds (group of ion identities) in the given project-s ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -381,7 +376,6 @@ Page of available compounds (group of ion identities) in the given project-space ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/ExperimentalApi.md b/sirius-sdk/sirius-sdk.openapi/docs/ExperimentalApi.md index ae284566d3..de7f02dd36 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/ExperimentalApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/ExperimentalApi.md @@ -20,7 +20,6 @@ Get data quality information for feature (aligned over runs) with the given iden ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/FeaturesApi.md b/sirius-sdk/sirius-sdk.openapi/docs/FeaturesApi.md index bfb46e0d83..c041b4a4bf 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/FeaturesApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/FeaturesApi.md @@ -54,7 +54,6 @@ Import (aligned) features into the project. Features must not exist in the proje ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -127,7 +126,6 @@ Delete feature (aligned over runs) with the given identifier from the specified ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -195,7 +193,6 @@ Delete feature (aligned over runs) with the given identifier from the specified ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -263,7 +260,6 @@ Get feature (aligned over runs) with the given identifier from the specified pro ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -334,7 +330,6 @@ Get all available features (aligned over runs) in the given project-space. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -403,7 +398,6 @@ Get all available features (aligned over runs) in the given project-space. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -478,7 +472,6 @@ Best matching compound classes, Set of the highest scoring compound classes (CA ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -549,7 +542,6 @@ All predicted compound classes (CANOPUS) from ClassyFire and NPC and their proba ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -620,7 +612,6 @@ List of de novo structure candidates (e.g. generated by MsNovelist) ranked by CS ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -691,7 +682,6 @@ List of de novo structure candidates (e.g. generated by MsNovelist) ranked by CS ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -764,7 +754,6 @@ Page of de novo structure candidates (e.g. generated by MsNovelist) ranked by CS ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -843,7 +832,6 @@ Page of de novo structure candidates (e.g. generated by MsNovelist) ranked by CS ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -920,7 +908,6 @@ Returns predicted fingerprint (CSI:FingerID) for the given formula result identi ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -991,7 +978,6 @@ Returns MS/MS Spectrum (Merged MS/MS and measured MS/MS) which is annotated with ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1062,7 +1048,6 @@ Returns a fragmentation spectrum (e.g. Merged MS/MS) which is annotated with fra ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1135,7 +1120,6 @@ FormulaResultContainers for the given 'formulaId' with minimal informati ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1208,7 +1192,6 @@ List of FormulaResultContainers available for this feature with minimal informat ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1279,7 +1262,6 @@ Page of FormulaResultContainers available for this feature with minimal informat ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1356,7 +1338,6 @@ Returns fragmentation tree (SIRIUS) for the given formula result identifier Thi ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1427,7 +1408,6 @@ Returns Isotope pattern information (simulated isotope pattern, measured isotope ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1498,7 +1478,6 @@ Returns Lipid annotation (ElGordo) for the given formula result identifier. ElG ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1569,7 +1548,6 @@ Mass Spec data (input data) for the given 'alignedFeatureId' . ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1638,7 +1616,6 @@ Returns a single quantification table row for the given feature. The quantificat ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1709,7 +1686,6 @@ Returns fragmentation tree (SIRIUS) for the given formula result identifier in S ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1780,7 +1756,6 @@ List of spectral library matches for the given 'alignedFeatureId'. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1853,7 +1828,6 @@ List of spectral library matches for the given 'alignedFeatureId'. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1930,7 +1904,6 @@ Page of spectral library matches for the given 'alignedFeatureId'. If a ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2013,7 +1986,6 @@ Summarize matched reference spectra for the given 'alignedFeatureId'. I ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2088,7 +2060,6 @@ Returns MS/MS Data (Merged MS/MS and list of measured MS/MS ) which are annotate ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2161,7 +2132,6 @@ Returns a fragmentation spectrum (e.g. Merged MS/MS) which is annotated with fra ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2236,7 +2206,6 @@ List of structure database search candidates ranked by CSI:FingerID score for th ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2307,7 +2276,6 @@ List of CSI:FingerID structure database search candidates for the given 'for ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2380,7 +2348,6 @@ Page of CSI:FingerID structure database search candidates for the given 'for ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2459,7 +2426,6 @@ Page of structure database search candidates ranked by CSI:FingerID score for th ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -2536,7 +2502,6 @@ Returns the traces of the given feature. A trace consists of m/z and intensity v ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/GuiApi.md b/sirius-sdk/sirius-sdk.openapi/docs/GuiApi.md index fc7b5113d5..6e1f0a5898 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/GuiApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/GuiApi.md @@ -22,7 +22,6 @@ Close GUI instance of given project-space if available. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -91,7 +90,6 @@ Get list of currently running gui windows, managed by this SIRIUS instance. Not ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -154,7 +152,6 @@ Open GUI instance on specified project-space and bring the GUI window to foregro ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/InfoApi.md b/sirius-sdk/sirius-sdk.openapi/docs/InfoApi.md index 72141ca8c7..2fc26ae2dd 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/InfoApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/InfoApi.md @@ -19,7 +19,6 @@ All URIs are relative to *http://localhost:8888* ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -80,7 +79,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/JobsApi.md b/sirius-sdk/sirius-sdk.openapi/docs/JobsApi.md index f53dcd9029..fcf21a55c1 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/JobsApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/JobsApi.md @@ -33,7 +33,6 @@ Delete job. Specify how to behave for running jobs. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -105,7 +104,6 @@ Delete job configuration with given name. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -171,7 +169,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -241,7 +238,6 @@ Request default job configuration ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -308,7 +304,6 @@ Get job information and its current state and progress (if available). ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -379,7 +374,6 @@ Request job configuration with given name. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -448,7 +442,6 @@ Request all available job configurations ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -515,7 +508,6 @@ Get List of all available jobs with information such as current state and progre ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -584,7 +576,6 @@ Get Page of jobs with information such as current state and progress (if availab ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -657,7 +648,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -726,7 +716,6 @@ Add new job configuration with given name. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -797,7 +786,6 @@ Start computation for given command and input. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -868,7 +856,6 @@ Start computation for given compounds and with given parameters. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -939,7 +926,6 @@ Start computation for given compounds and with parameters from a stored job-conf ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/LoginAndAccountApi.md b/sirius-sdk/sirius-sdk.openapi/docs/LoginAndAccountApi.md index 3d2229c697..237a42c0e6 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/LoginAndAccountApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/LoginAndAccountApi.md @@ -28,7 +28,6 @@ Get information about the account currently logged in. Fails if not logged in. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -95,7 +94,6 @@ Get SignUp URL (For signUp via web browser) ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -158,7 +156,6 @@ Get available subscriptions of the account currently logged in. Fails if not log ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -221,7 +218,6 @@ Check if a user is logged in. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -284,7 +280,6 @@ Login into SIRIUS web services and activate default subscription if available. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -357,7 +352,6 @@ Logout from SIRIUS web services. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -419,7 +413,6 @@ Open User portal in browser. If user is logged in SIRIUS tries to transfer the l ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -481,7 +474,6 @@ Select a subscription as active subscription to be used for computations. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -548,7 +540,6 @@ Open SignUp window in system browser and return signUp link. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/ProjectsApi.md b/sirius-sdk/sirius-sdk.openapi/docs/ProjectsApi.md index 62623c486f..7afa0bbb3b 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/ProjectsApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/ProjectsApi.md @@ -36,7 +36,6 @@ Close project-space and remove it from application. Project will NOT be deleted ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -102,7 +101,6 @@ Move an existing (opened) project-space to another location. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -175,7 +173,6 @@ Create and open a new project-space at given location and make it accessible via ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -244,7 +241,6 @@ Get CANOPUS prediction vector definition for ClassyFire classes ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -311,7 +307,6 @@ Get CANOPUS prediction vector definition for NPC classes ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -378,7 +373,6 @@ Get CSI:FingerID fingerprint (prediction vector) definition ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -447,7 +441,6 @@ Get project space info by its projectId. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -516,7 +509,6 @@ List opened project spaces. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -579,7 +571,6 @@ Import and Align full MS-Runs from various formats into the specified project P ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -650,7 +641,6 @@ Import and Align full MS-Runs from various formats into the specified project as ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -723,7 +713,6 @@ Import and Align full MS-Runs from various formats into the specified project as ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -796,7 +785,6 @@ Import and Align full MS-Runs from various formats into the specified project P ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -867,7 +855,6 @@ Import already preprocessed ms/ms data from various formats into the specified p ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -940,7 +927,6 @@ Import ms/ms data from the given format into the specified project-space as back ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1015,7 +1001,6 @@ Import ms/ms data from the given format into the specified project-space as back ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1090,7 +1075,6 @@ Import already preprocessed ms/ms data from various formats into the specified p ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -1163,7 +1147,6 @@ Open an existing project-space and make it accessible via the given projectId. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; diff --git a/sirius-sdk/sirius-sdk.openapi/docs/SearchableDatabasesApi.md b/sirius-sdk/sirius-sdk.openapi/docs/SearchableDatabasesApi.md index 3327f882b1..e740daf9b3 100644 --- a/sirius-sdk/sirius-sdk.openapi/docs/SearchableDatabasesApi.md +++ b/sirius-sdk/sirius-sdk.openapi/docs/SearchableDatabasesApi.md @@ -27,7 +27,6 @@ All URIs are relative to *http://localhost:8888* ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -92,7 +91,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -159,7 +157,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -224,7 +221,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -291,7 +287,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -356,7 +351,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -423,7 +417,6 @@ Start import of structure and spectra files into the specified database. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -494,7 +487,6 @@ Start import of structure and spectra files into the specified database. ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -565,7 +557,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration; @@ -631,7 +622,6 @@ No authorization required ```java // Import classes: - import io.sirius.ms.sdk.client.ApiClient; import io.sirius.ms.sdk.client.ApiException; import io.sirius.ms.sdk.client.Configuration;