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module_parser.ts
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module_parser.ts
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/**
* All algorithms to generate the visualizations for the modules
*
* Name des Moduls
* welche raw-data benoetigt werden
* welche parsed-data benoetigt werden
* die parse-funktion selbst implementieren; default (z.B: on Error etc)
* ein leeres Array ([]) zurueck geben
*/
import { errorDataType } from "./error_log"
import { raw } from "mysql"
import * as d3 from "d3"
import * as d3_sankey from "d3-sankey"
import { get_worse_carrier_status } from "./utilities/carrier_status"
import parse_sl_data from "./utilities/storylineParser"
import { Error_Log } from "./error_log"
import { sankey } from "./utilities/d3-sankey"
import * as cli_color from "cli-color"
import {
get_max_value,
get_min_value,
set_min_max_value,
} from "./utilities/min_max"
import storyline from "./utilities/storyline-vis"
const raw_error_prio: number = 1.7
const parsed_error_prio: number = 2.7
let error_log = new Error_Log()
const module_parser: { [key: string]: any } = {
patientdetail: {
needed_raw_data: [
"Patient_Bewegung_Ps",
"Patient_Labordaten_Ps",
"Patient_Vaccination",
"Patient_Symptom",
],
needed_parsed_data: [
"generate_mibi_investigations",
"generate_movement_rects",
],
call_function: (input_data: any, parameters: any, callback: Function) => {
let {
Patient_Symptom,
Patient_Vaccination,
Patient_Bewegung_Ps,
Patient_Labordaten_Ps,
generate_mibi_investigations,
generate_movement_rects,
} = input_data
let patientList: any[] = []
let min_ts: any = undefined
let max_ts: any = undefined
if (generate_movement_rects.error === undefined) {
set_min_max_value(
min_ts,
max_ts,
generate_mibi_investigations.data.min_ts,
generate_mibi_investigations.data.max_ts
)
}
// TODO: Wie muss ereignisTriangles und ereignisCircles generiert werden ?
let ereignisTriangles: object[] = []
let ereignisCircles: object[] = []
// #region globalTimeStamps , patientList & nosokomiale Patienten
if (generate_mibi_investigations.error === undefined) {
if (generate_mibi_investigations.data.investigations > 0) {
set_min_max_value(
min_ts,
max_ts,
generate_mibi_investigations.data.min_ts,
generate_mibi_investigations.data.max_ts
)
}
} else {
error_log.addError(
"generate_mibi_investigations",
parameters,
parsed_error_prio,
generate_mibi_investigations.error
)
}
if (Patient_Bewegung_Ps.error === undefined) {
Patient_Bewegung_Ps.data.forEach((element: any) => {
let pID = element.PatientID
let beginn = new Date(element.Beginn).getTime()
let ende = new Date(element.Ende).getTime()
if (!patientList.includes(pID)) {
patientList.push(pID)
}
set_min_max_value(min_ts, max_ts, beginn, ende)
})
} else {
error_log.addError(
"Patient_Bewegung_Ps",
parameters,
raw_error_prio,
Patient_Bewegung_Ps.error
)
}
if (Patient_Labordaten_Ps.error === undefined) {
Patient_Labordaten_Ps.data.forEach((element: any) => {
let pID = element.PatientID
if (!patientList.includes(pID)) {
patientList.push(pID)
}
})
} else {
error_log.addError(
"Patient_Labordaten_Ps",
parameters,
raw_error_prio,
Patient_Labordaten_Ps.error
)
}
let counter = 0
if (Patient_Vaccination.error === undefined) {
Patient_Vaccination.data.forEach((element: any) => {
let pID = element.PatientenID
let impfDatum = new Date(element.DokumentationsID).getTime()
//console.log(cli_color.blueBright(pID))
if (!patientList.includes(pID)) {
counter++
//console.log(cli_color.blueBright(counter))
patientList.push(pID)
}
if (impfDatum < min_ts) {
min_ts = impfDatum
}
if (impfDatum > max_ts) {
max_ts = impfDatum
}
})
} else {
error_log.addError(
"Patient_Vaccination",
parameters,
raw_error_prio,
Patient_Vaccination.error
)
}
if (Patient_Symptom.error === undefined) {
Patient_Symptom.data.forEach((element: any) => {
let pID = element.PatientenID
let first_date = new Date(element.Beginn).getTime()
let last_date = new Date(element.Rueckgang).getTime()
if (!patientList.includes(pID)) {
patientList.push(pID)
}
set_min_max_value(min_ts, max_ts, first_date, last_date)
})
} else {
error_log.addError(
"Patient_Symptom",
parameters,
raw_error_prio,
Patient_Symptom.error
)
}
// #region virusLastRects
let virusLastRects: object[] = []
if (Patient_Labordaten_Ps.error === undefined) {
let patient_and_test: object[] = []
// Patient_Labordaten_Ps.data.forEach((labor_data: any) => {
// let patID_test = {
// patID: labor_data.PatientID,
// testDate: new Date(labor_data.Befunddatum).getTime(),
// }
// patient_and_test.push(patID_test)
// })
// Patient_Labordaten_Ps.data.forEach((d: any) => {
// })
patientList.forEach((pid: any) => {
// let virusLastRect: any = {
// patientID: pid,
// }
let virus_data = Patient_Labordaten_Ps.data.filter(
(d: any) => d.PatientID === pid
)
virus_data.sort(
(a: any, b: any) =>
new Date(a.Befunddatum).getTime() -
new Date(b.Befunddatum).getTime()
)
virus_data.forEach((vd: any, i: any) => {
set_min_max_value(
min_ts,
max_ts,
new Date(vd.Befunddatum).getTime()
)
let begin = vd.Befunddatum
let end =
i < virus_data.length - 1
? virus_data[i + 1].Befunddatum
: undefined
let testArt = undefined
if (vd.KeimID === "94558-4") {
testArt = "antiGen"
}
virusLastRects.push({
begin: new Date(begin).getTime(),
end: end ? new Date(end).getTime() : undefined,
testArt,
...vd,
Quantity: Number(vd.Quantity),
})
})
})
} else {
error_log.addError(
"Patient_Labordaten_Ps",
parameters,
raw_error_prio,
Patient_Labordaten_Ps.error
)
}
// #endregion
// #region stationenRects
let stationenRects: object[] = []
let stationsArten: any = [
"CovidStation",
"NormalStation",
"ICR",
"Intensivstation",
]
if (Patient_Bewegung_Ps.error === undefined) {
Patient_Bewegung_Ps.data.forEach((mov: any) => {
let stationsStruct: any = {
aufenthaltsBegin: new Date(mov.Beginn).getTime(),
aufenthaltsEnde: new Date(mov.Ende).getTime(),
patient_id: mov.PatientID,
station_id: mov.Station,
/* wann soll "ICR" gesetzt werden?
* ist es sinnvoll alles was nicht Covid / Intensiv / ICR ist als NormalStation zu deklarieren?
* default für stationsArt: NormalStation
*/
stationsArt: stationsArten[1],
}
// ! Bei Verlegung auf Covid- od. Intensivstation wird erreignisTriangle gesetzt
if (mov.Station === "Coronastation") {
stationsStruct.stationsArt = stationsArten[0]
let triangleStruct: any = {
patientID: mov.PatientID,
ereignisTimeStamp: new Date(mov.Beginn).getTime(),
}
ereignisTriangles.push(triangleStruct)
}
if (mov.Fachabteilung === "Intensivstation") {
stationsStruct.stationsArt = stationsArten[3]
let triangleStruct: any = {
patientID: mov.PatientID,
ereignisTimeStamp: new Date(mov.Beginn).getTime(),
}
ereignisTriangles.push(triangleStruct)
}
set_min_max_value(
min_ts,
max_ts,
stationsStruct.aufenthaltsBegin,
stationsStruct.aufenthaltsEnde
)
stationenRects.push(stationsStruct)
})
} else {
error_log.addError(
"Patient_Bewegung_Ps",
parameters,
raw_error_prio,
Patient_Bewegung_Ps.error
)
}
// #endregion
// #region Impfdaten
let impfDaten: object[] = []
let vacc_injection_data: any[] = []
let vacc_list: string[] = []
if (Patient_Vaccination.error === undefined) {
Patient_Vaccination.data.forEach((vacc_data: any) => {
let vacc_inj_data = vacc_data
vacc_inj_data.doc_ts = new Date(
vacc_inj_data.DokumentationsID
).getTime()
vacc_injection_data.push(vacc_data)
if (!vacc_list.includes(vacc_data.PatientenID)) {
vacc_list.push(vacc_data.PatientenID)
let impfdatenStruct = {
patientID: vacc_data.PatientenID,
medikament: new String(),
anzahl_impfungen: vacc_data.Dosierungsreihenfolge,
}
if (
vacc_data.Impfstoff ===
"Vaccine product containing only Severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid (medicinal product)"
) {
impfdatenStruct.medikament =
"Comirnaty / COVID-19 Vaccine Moderna"
}
if (
vacc_data.Impfstoff ===
"Vaccine product containing only Severe acute respiratory syndrome coronavirus 2 antigen (medicinal product)"
) {
impfdatenStruct.medikament = "Vaxzevria / Janssen"
}
impfDaten.push(impfdatenStruct)
} else {
impfDaten.forEach((data: any) => {
if (data.patientID === vacc_data.PatientenID) {
if (data.anzahl_impfungen < vacc_data.Dosierungsreihenfolge) {
data.anzahl_impfungen = vacc_data.Dosierungsreihenfolge
}
}
})
}
/**
* @Tom aktuell wird nur ein Objekt pro Patient übergeben. Vllt. ist es sinnvoller pro stattgefundener
* Impfung ein Objekt zu übergeben. (z. Bsp.: Um Kreuzimpfungen darzustellen? )
*
* TODO: ja sollte in überarbeiteter Version definitiv gemacht werden; für v0.9 erstmal so
*/
})
patientList.forEach((pid) => {
if (!vacc_list.includes(pid)) {
vacc_list.push(pid)
let impfdatenStruct = {
patientID: pid,
medikament: "No vaccine",
anzahl_impfungen: 0,
}
impfDaten.push(impfdatenStruct)
}
})
vacc_injection_data.sort(
(a, b) => a.Dosierungsreihenfolge - b.Dosierungsreihenfolge
)
} else {
error_log.addError(
"Patient_Vaccination",
parameters,
raw_error_prio,
Patient_Vaccination.error
)
}
// #endregion
// #region Symptomdaten
let symptomDaten: object[] = []
if (Patient_Symptom.error === undefined) {
Patient_Symptom.data.forEach((symptom_data: any) => {
let symptomStruct = {
patientID: symptom_data.PatientenID,
// ! symptomArt soll gastroenterol. / respirat. / system. sein --> keine Daten vorhanden
symptomArt: symptom_data.NameDesSymptoms,
symptomBeginn: new Date(symptom_data.Beginn).getTime(),
symptomEnde: new Date(symptom_data.Rueckgang).getTime(),
negation: symptom_data.AusschlussAussage,
}
set_min_max_value(
min_ts,
max_ts,
symptomStruct.symptomBeginn,
symptomStruct.symptomEnde
)
symptomDaten.push(symptomStruct)
// ! bei Symptombeginn wird aktuell ereignisTriangle gesetzt ( bei Rueckgang ereignisCircle ) !
let triangleStruct: any = {
patientID: symptom_data.PatientenID,
ereignisTimeStamp: new Date(symptom_data.Beginn).getTime(),
}
ereignisTriangles.push(triangleStruct)
/*
let circleStruct: any = {
patientID: symptom_data.PatientenID,
ereignisTimeStamp: new Date(symptom_data.Rueckgang).getTime()
}
ereignisCircles.push(circleStruct)
*/
})
} else {
error_log.addError(
"Patient_Symptom",
parameters,
raw_error_prio,
Patient_Symptom.error
)
}
//#endregion Symptomdaten
// console.log(cli_color.green(patientList.length))
callback({
virusLastRects,
stationenRects,
ereignisTriangles,
ereignisCircles,
//annotationsTriangles,
min_ts,
max_ts,
impfDaten,
vacc_injection_data,
symptomDaten,
...generate_movement_rects.data,
patientList,
return_log: error_log.clearAndReturnLog(),
})
},
},
epikurve: {
needed_raw_data: [
"Labor_ErregerProTag_TTEsKSs",
"OutbreakDetectionResultSet",
"OutbreakDetectionConfigurations",
],
// needed_raw_data: ["Labor_ErregerProTag_TTEsKSs"],
// needed_parsed_data: ["rki_data_by_day"],
needed_parsed_data: [],
// TODO: PRO ERREGER!!! aktuell alle Erreger in Reihe geschalten
// TODO: die initial timestamps for timelense sind null...
call_function: (input_data: any, parameters: any, callback: Function) => {
let {
Labor_ErregerProTag_TTEsKSs,
OutbreakDetectionResultSet,
OutbreakDetectionConfigurations,
} = input_data
let { starttime, endtime, station, pathogenList, configName } = parameters
let initial_timelense_timestamps: number[] = []
let timespan: number[] = []
let newData: any[] = []
let stationIDs: string[] = []
let pathogenIDs: string[] = []
let dayDataSets: any = {}
let config_stationid: any = undefined
// das bleibt drin, weil "frische" Daten sind ja nie schlecht...
if (
configName !== "" &&
OutbreakDetectionConfigurations.error === undefined
) {
// get the stationid for the selected config
OutbreakDetectionConfigurations.data.forEach((conf: any) => {
if (conf.name === configName) {
config_stationid = conf.StationID
}
})
}
// TODO: Pascal fragen, ob das benötigt wird, oder ob RKI Daten das schon haben...
if (OutbreakDetectionResultSet.error === undefined) {
OutbreakDetectionResultSet.data.forEach((d: any) => {
d.StationID = config_stationid
})
}
if (
Labor_ErregerProTag_TTEsKSs.error === undefined &&
Labor_ErregerProTag_TTEsKSs.data.length > 0
) {
// Fuer jede Station und jeden Pathogen eine Kurve erzeugen
// + Endemische Kurven jeweils
// + für 7 Tage / 28 Tage akkumuliert
let raw_data = Labor_ErregerProTag_TTEsKSs.data
// ! FUER ENDE-MAERZ DAZU GEMACHT
raw_data.forEach((d: any) => {
if (d.anzahl_gesamt !== undefined) {
d.Anzahl_cs = d.anzahl_gesamt
d.MAVG7_cs = d.anzahl_gesamt_av7
d.MAVG28_cs = d.anzahl_gesamt_av28
}
// // fuer jeden Tag die Ausbruchswahrscheinlichkeit
// // und die anderen Daten asu RKIalgo rauslesen
// if (rki_data_by_day.error === undefined) {
// let index = rki_data_by_day.data.findIndex(
// (rki_d: any) =>
// rki_d.timestamp === new Date(d.Datum.split("T")[0]).getTime()
// )
// console.log(index)
// if (index >= 0) {
// console.log("geht rein")
// d = {
// ...d,
// ...rki_data_by_day.data[index],
// }
// console.log(d)
// }
// }
})
raw_data.forEach((d: any, i: any) => {
if (d.StationID === null) [(d.StationID = "klinik")]
d.timestamp = new Date(d.Datum.split(".")[0]).getTime()
// unsere Datenbank liefer da glaube ich einfach nichts zurueck
d.avg7 = d.MAVG7 ? d.MAVG7 : 0
d.avg28 = d.MAVG28 ? d.MAVG28 : 0
d.avg7_cs = d.MAVG7_cs ? d.MAVG7_cs : 0
d.avg28_cs = d.MAVG28_cs ? d.MAVG28_cs : 0
if (!stationIDs.includes(d.StationID)) {
stationIDs.push(d.StationID)
}
if (!pathogenIDs.includes(d.ErregerID)) {
pathogenIDs.push(d.ErregerID)
}
})
pathogenIDs.forEach((pathogen: string) => {
// })
let data = JSON.parse(JSON.stringify(raw_data)).filter(
(p: any) => pathogen === p.ErregerID
)
data.forEach((d: any) => {
// fuer jeden Tag die Ausbruchswahrscheinlichkeit
// und die anderen Daten asu RKIalgo rauslesen
if (OutbreakDetectionResultSet.error === undefined) {
// !TODO nur temporaer zum testen lokal...
if (configName === "") {
OutbreakDetectionResultSet.data = []
}
let index = OutbreakDetectionResultSet.data.findIndex(
(rki_d: any) =>
new Date(rki_d.Zeitstempel.split("T")[0]).getTime() ===
new Date(d.Datum.split("T")[0]).getTime() &&
rki_d.StationID === d.StationID
// && rki_d.pathogen === d.ErregerID
)
//console.log(index);
if (index >= 0) {
//console.log("geht rein");
// d = {
// ...d,
// ...rki_data_by_day.data[index],
// }
d.rki_data = OutbreakDetectionResultSet.data[index]
// console.log(d)
}
} else {
error_log.addError(
"OutbreakDetectionResultSet",
parameters,
raw_error_prio,
OutbreakDetectionResultSet.error
)
}
})
stationIDs.forEach((stationID: any) => {
if (dayDataSets["K" + pathogen] === undefined) {
dayDataSets["K" + pathogen] = {}
}
dayDataSets["K" + pathogen][stationID] = data.filter(
(d: any) => d.StationID === stationID
)
let accumulated_count = 0
let copy_day
dayDataSets["K" + pathogen][stationID].forEach(
(d: any, i: number) => {}
)
})
})
/**
* Initiale Anfangs- und Endzeit abspeichern
*/
timespan = [
raw_data[0].timestamp,
raw_data[raw_data.length - 1].timestamp,
]
initial_timelense_timestamps = [
raw_data[0].timestamp,
raw_data[raw_data.length - 1].timestamp + 1000 * 60 * 60 * 24,
// data[0][0].timestamp + 1000 * 60 * 60 * 24 * 60,
// data[0][data[0].length - 1].timestamp + 1000 * 60 * 60 * 24 - 1000 * 60 * 60 * 24 * 60
]
// let newData = [dayDataSets, weekDataSets, monthDataSets]
} else {
error_log.addError(
"Labor_ErregerProTag_TTEsKSs",
parameters,
raw_error_prio,
Labor_ErregerProTag_TTEsKSs.error
)
}
callback({
timestamp: new Date().getTime(),
// data: { dayDataSets, weekDataSets, monthDataSets },
data: dayDataSets,
timespan,
initial_timelense_timestamps,
stationIDs,
pathogenIDs,
// rki_data_by_day,
return_log: error_log.clearAndReturnLog(),
rki_data_by_day: OutbreakDetectionResultSet,
rki_configs: OutbreakDetectionConfigurations.data,
config_stationid,
configName,
})
// return {
// timestamp: new Date().getTime(),
// // data: { dayDataSets, weekDataSets, monthDataSets },
// data: [dayDataSets, weekDataSets, monthDataSets],
// initial_timelense_timestamps,
// stationIDs,
// pathogenIDs,
// }
},
},
demo_linelist: {
needed_raw_data: ["Patient_Bewegung_Ps"],
needed_parsed_data: ["generate_mibi_investigations"],
call_function: (input_data: any, parameters: any, callback: Function) => {
let { Patient_Bewegung_Ps, generate_mibi_investigations } = input_data
let { patientList } = parameters
let ts_start = Number.MAX_VALUE
let ts_end = 0
let movement_rects: object[] = []
let movement_dots: object[] = []
let investigation_rects: object[] = []
// generate visualization for movement data (horizontal rectangles)
// only if there is no error in the data
if (Patient_Bewegung_Ps.error === undefined) {
let movement_rect_top_position: any = {}
Patient_Bewegung_Ps.data.forEach((movement: any) => {
let begin = new Date(movement.Beginn).getTime()
let end = new Date(movement.Ende).getTime()
if (begin < ts_start) {
ts_start = begin
}
if (end > ts_end) {
ts_end = end
}
let vis_struct: any = {
begin: begin,
end: end,
patient_id: movement.PatientID,
station_id: movement.StationID,
station_name: movement.Station,
movement_type: movement.BewegungstypID,
}
if (movement.BewegungstypID === 4) {
movement_dots.push(vis_struct)
} else {
if (movement_rect_top_position[movement.PatientID]) {
vis_struct.top = true
movement_rect_top_position[movement.PatientID] = false
} else {
vis_struct.top = false
movement_rect_top_position[movement.PatientID] = true
}
movement_rects.push(vis_struct)
}
})
} else {
error_log.addError(
"Patient_Bewegung_Ps",
parameters,
raw_error_prio,
Patient_Bewegung_Ps.error
)
}
// generate visualization for investigation data (vertical rectangles)
// only if there is no error in the data
if (generate_mibi_investigations.error === undefined) {
let { first_timestamp, last_timestamp, investigations } =
generate_mibi_investigations.data
if (ts_start > first_timestamp) {
ts_start = first_timestamp
}
if (ts_end < last_timestamp) {
ts_end = last_timestamp
}
investigation_rects = investigations
} else {
error_log.addError(
"generate_mibi_investigations",
parameters,
parsed_error_prio,
generate_mibi_investigations.error
)
}
// return {
// // data: ["linelist vis data", input_data],
// timestamp: new Date().getTime(),
// ts_start,
// ts_end,
// patientList,
// movement_rects,
// movement_dots,
// investigation_rects,
// }
callback({
// data: ["linelist vis data", input_data],
timestamp: new Date().getTime(),
ts_start,
ts_end,
patientList,
movement_rects,
movement_dots,
investigation_rects,
return_log: error_log.clearAndReturnLog(),
})
},
},
kontaktnetzwerk: {
needed_raw_data: [],
needed_parsed_data: ["generate_contact_graph"],
call_function: (input_data: any, parameters: any, callback: Function) => {
let { generate_contact_graph } = input_data
if (generate_contact_graph.error !== undefined) {
error_log.addError(
"generate_contact_graph",
parameters,
parsed_error_prio,
generate_contact_graph.error
)
}
callback({
...generate_contact_graph.data,
return_log: error_log.clearAndReturnLog(),
})
},
},
linelist: {
needed_raw_data: ["Patient_Bewegung_Ps"],
needed_parsed_data: [
"generate_mibi_investigations",
"generate_movement_rects",
],
call_function: (input_data: any, parameters: any, callback: Function) => {
let {
Patient_Bewegung_Ps,
generate_mibi_investigations,
generate_movement_rects,
} = input_data
// // TODO: SMICS-0.8
// // Patientenliste wegen Nth-Degree rauslesen
// let new_patient_list: any[] = []
// if (Patient_Bewegung_Ps.error === undefined) {
// Patient_Bewegung_Ps.data.forEach((mov: any) => {
// if (!new_patient_list.includes(mov.PatientID)) {
// new_patient_list.push(mov.PatientID)
// }
// })
// } else {
// error_log.addError(
//
// "Patient_Bewegung_Ps",
// parameters,
// raw_error_prio,
// Patient_Bewegung_Ps.error
//
// )
// }
let {
min_ts,
max_ts,
patientList,
movement_rects,
movement_dots,
allStations,
unknown_rects,
} = generate_movement_rects.data
let investigation_rects: object[] = []
let status_rects: any[] = []
if (generate_mibi_investigations.error === undefined) {
// generate visualization for investigation data (vertical rectangles)
// only if there is no error in the data
let { investigations, status_changes } =
generate_mibi_investigations.data
// min_ts = get_min_value(min_ts, generate_mibi_investigations.data.min_ts)
// max_ts = get_max_value(max_ts, generate_mibi_investigations.data.max_ts)
set_min_max_value(
min_ts,
max_ts,
generate_mibi_investigations.data.min_ts,
generate_mibi_investigations.data.max_ts
)
investigation_rects = investigations
if (Patient_Bewegung_Ps.error === undefined) {
/**
* generate status rects
*
* for every patient_id AND pathogen_id
* - begin_min_ts_ts
* - end_max_ts_ts
*
* - "every pathogen":
* - "not_tested" -> einfach grauer balken für "unknown"
* - dann für alle getesteten pathogens -> aus status changes
*/
patientList.forEach((pID: any) => {
// get first and last timestamp
let first_ts: any = undefined
let last_ts: any = undefined
let patient_movements = Patient_Bewegung_Ps.data.filter(
(d: any) => d.PatientID === pID && d.BewegungstypID !== 4
)
patient_movements.forEach((movement: any) => {
let begin = new Date(movement.Beginn).getTime()
let end = new Date(movement.Ende).getTime()
if (first_ts === undefined || begin < first_ts) {
first_ts = begin
}
if (last_ts === undefined || end > last_ts) {
last_ts = end
}
})
// generate blank/"unknown" rectangle
let unknown_rect = {
patient_id: pID,
pathogen_id: undefined,
begin: first_ts,
end: last_ts,
status: "unknown",
}
// status_rects.push(unknown_rect)
// unknown_rects.push(unknown_rect)
unknown_rects[pID] = unknown_rect
// console.log(`.........................Status Rects for ${pID}`)
// console.log("pID", pID)
// console.table(status_changes[pID])
// !wenn jemand NIE getestet wurde, gibt es keine
// !Labordaten fuer ihn, also kann er nicht in der
// !mibiInvestigations-PatientListe auftauchen...
let tested_pathogens: any[] = []
if (status_changes[pID]) {
tested_pathogens = Object.getOwnPropertyNames(status_changes[pID])
}
// let tested_pathogens: any[] = Object.getOwnPropertyNames(
// status_changes[pID]
// )
// console.log(
// `Tested Pathogens for this Patient... ${tested_pathogens}`
// )
// console.table(status_changes[pID])
tested_pathogens.forEach((pathID: any) => {
let current_last_ts = first_ts
let current_status = "unknown"
// Status von vor der Aufnahme ermitteln
status_changes[pID][pathID].forEach(
(stat_change: any, i: number) => {
// console.table(stat_change)
if (stat_change.timestamp <= min_ts) {
// console.log(`before first_ts ${stat_change}`)
current_status = get_worse_carrier_status(
current_status,
stat_change.new_status
)
// TODO: statt nur bei Verschlimmerung kann auch jedes mal neues Rectangle erzeugt werden
// current_status = stat_change.new_status
}
}
)
status_rects.push({
patient_id: pID,
pathogen_id: pathID,
begin: first_ts,
end: last_ts,
status: current_status,
})
// console.log(`Status VOR der Aufnahme: ${current_status}`)
status_changes[pID][pathID].forEach(
(stat_change: any, i: number) => {
let stat_change_ts = stat_change.timestamp
// console.table(stat_change)
// Nur wenn status_change innerhalb des Aufenthaltszeitraums liegt
if (stat_change_ts > min_ts && stat_change_ts < max_ts) {
let new_status = get_worse_carrier_status(
current_status,
stat_change.new_status
)
// console.log(`NEUER STATUS des Patienten: ${new_status}`)
// TODO: statt nur bei Verschlimmerung kann auch jedes mal neues Rectangle erzeugt werden
// new_status = stat_change.new_status
if (new_status !== current_status) {
status_rects[status_rects.length - 1].end = stat_change_ts
status_rects.push({
patient_id: pID,
pathogen_id: pathID,
begin: stat_change_ts,
end: last_ts,
status: new_status,
})
current_status = new_status
// console.log(`GEPSCHTER Status Recht: ${new_status}`)
}
}
}
)
})
})
}
} else {
error_log.addError(
"generate_mibi_investigations",
parameters,
parsed_error_prio,
generate_mibi_investigations.error
)
}
let patients_width_status_rects: any = []
status_rects.forEach((sr: any) => {
if (!patients_width_status_rects.includes(sr.patient_id)) {
patients_width_status_rects.push(sr.patient_id)
}
})
if (patients_width_status_rects.length < patientList.length) {
patientList.forEach((pID: any) => {
if (!patients_width_status_rects.includes(pID)) {
status_rects.push(unknown_rects[pID])
}
})
}