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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(archR)
export(archR_set_config)
export(collate_archR_result)
export(collate_clusters)
export(get_clBasVec)
export(get_clBasVec_k)
export(get_clBasVec_m)
export(get_one_hot_encoded_seqs)
export(get_seqClLab)
export(get_seqs_clust_list)
export(handle_dir_creation)
export(make_dinuc_PWMs)
export(make_sinuc_PWMs)
export(plot_arch_for_clusters)
export(plot_ggheatmap)
export(plot_ggseqlogo)
export(plot_ggseqlogo_of_seqs)
export(prepare_data_from_FASTA)
export(run_archR_UI)
export(seqs_str)
export(viz_bas_vec_heatmap)
export(viz_bas_vec_heatmap_seqlogo)
export(viz_bas_vec_seqlogo)
export(viz_seqs_acgt_mat_from_seqs)
import(cli)
import(ggplot2)
import(ggseqlogo)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,width)
importFrom(Matrix,Matrix)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(graphics,axis)
importFrom(graphics,image)
importFrom(methods,is)
importFrom(parallel,makeCluster)
importFrom(parallel,setDefaultCluster)
importFrom(parallel,stopCluster)
importFrom(prettyunits,pretty_dt)
importFrom(reshape2,melt)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(utils,capture.output)
importFrom(utils,tail)