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Chromosomal Coordinates #6
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Hi @ankushs0128 , On the other hand, if the data is not precisely aligned/alignable such as with ChIP-seq, at the moment one can use 'cross-validation'-based model selection*. While I know that this works, I haven't yet extensively tested/checked this particular case. If I may ask, the coordinates that you have are from which experiment? You can give *See argument |
Hi @ankushs0128 , |
Ping @ankushs0128 Also, perhaps you may be interested in the recent most version which has additional improvements handling/avoiding identification of overfit clusters. Cheers |
sorry for the late reply,
Haven´t tried thereafter.
…On Mon, Nov 8, 2021 at 6:59 PM Sarvesh Nikumbh ***@***.***> wrote:
Ping @ankushs0128 <https://github.com/ankushs0128>
Sorry to bother you. Just wanted to check if you did try archR and if yes,
how did it go.
Also, perhaps you may be interested in the recent most version which has
additional improvements handling/avoiding identification of overfit
clusters.
Cheers
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Hi ,
I stumbled upon your package and it seems quite useful. I have quite a few files containing chromosomal coordinates and would like to check the regulatory elements within those chromosomal coordinates, Will it be possible to utilize the package for the analysis?
Best
Ankush
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