{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":63755587,"defaultBranch":"master","name":"MMseqs2","ownerLogin":"soedinglab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-07-20T06:17:59.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/7237671?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715406327.0","currentOid":""},"activityList":{"items":[{"before":"fb38b7d4926a102997744f0cb5853d0a3c53f5bd","after":"816c5c91da9f0360f2c99d066a77ef033e917e79","ref":"refs/heads/master","pushedAt":"2024-07-26T04:57:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Fix PPOS","shortMessageHtmlLink":"Fix PPOS"}},{"before":"a14688744081c15439fa3092eec9dfd8be40440b","after":"fb38b7d4926a102997744f0cb5853d0a3c53f5bd","ref":"refs/heads/master","pushedAt":"2024-07-26T04:53:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Fix PPOS code in convertalis","shortMessageHtmlLink":"Fix PPOS code in convertalis"}},{"before":"62975ca936b912083c2218e4e30ad962901cbb3b","after":"a14688744081c15439fa3092eec9dfd8be40440b","ref":"refs/heads/master","pushedAt":"2024-07-23T06:31:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Allow tsv2exprofiledb to not compress outputs","shortMessageHtmlLink":"Allow tsv2exprofiledb to not compress outputs"}},{"before":"6267ffba554845c1b284de3f665d2b143fa81a55","after":"62975ca936b912083c2218e4e30ad962901cbb3b","ref":"refs/heads/master","pushedAt":"2024-07-11T11:18:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Move azure to macos-12","shortMessageHtmlLink":"Move azure to macos-12"}},{"before":"9c04ae431d007eebea5a1ddbb2f969139283b0a0","after":"6267ffba554845c1b284de3f665d2b143fa81a55","ref":"refs/heads/master","pushedAt":"2024-07-11T05:57:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix realignment coverage","shortMessageHtmlLink":"Fix realignment coverage"}},{"before":"36ac6b5adbc1a7bc1de7747db412aa08a673fbf6","after":"9c04ae431d007eebea5a1ddbb2f969139283b0a0","ref":"refs/heads/master","pushedAt":"2024-07-09T15:00:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix GCC 14 template warnings","shortMessageHtmlLink":"Fix GCC 14 template warnings"}},{"before":"0b27c9d7d7757f9530f2efab14d246d268849925","after":"36ac6b5adbc1a7bc1de7747db412aa08a673fbf6","ref":"refs/heads/master","pushedAt":"2024-07-08T00:55:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Clean-up dbreader in summarizeresult","shortMessageHtmlLink":"Clean-up dbreader in summarizeresult"}},{"before":"25fc2108e0da107de5da157d68e5e7d8274a69ea","after":"0b27c9d7d7757f9530f2efab14d246d268849925","ref":"refs/heads/master","pushedAt":"2024-06-11T07:38:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Allow resuming of interrupted downloads if databases and createtaxdb","shortMessageHtmlLink":"Allow resuming of interrupted downloads if databases and createtaxdb"}},{"before":"5f23f1fd6d88056879d901f5d027f18d592d785c","after":"25fc2108e0da107de5da157d68e5e7d8274a69ea","ref":"refs/heads/master","pushedAt":"2024-05-23T07:07:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Explicitly set omp include directories","shortMessageHtmlLink":"Explicitly set omp include directories"}},{"before":"417f22f272b5500b9f33c6c04652e6bcf2aac21b","after":"5f23f1fd6d88056879d901f5d027f18d592d785c","ref":"refs/heads/master","pushedAt":"2024-05-21T08:42:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix SAM output's backtrace for nucl-prot backtraces and show rev-comp seq correctly #845","shortMessageHtmlLink":"Fix SAM output's backtrace for nucl-prot backtraces and show rev-comp…"}},{"before":"b6db541afd2be9ce802d9bbbd2018d42dcd13231","after":"417f22f272b5500b9f33c6c04652e6bcf2aac21b","ref":"refs/heads/master","pushedAt":"2024-05-21T07:07:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Implement `qframe`, `tframe` in `convertalis` (#615, #803)","shortMessageHtmlLink":"Implement qframe, tframe in convertalis (#615, #803)"}},{"before":"5b4c8163d057b93ba1063e5352b56e23835986bc","after":"b6db541afd2be9ce802d9bbbd2018d42dcd13231","ref":"refs/heads/master","pushedAt":"2024-05-21T07:03:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Update regression for longest fragment recovery","shortMessageHtmlLink":"Update regression for longest fragment recovery"}},{"before":"998c50a01da760713ca2c7580801e94555d23c4d","after":"5b4c8163d057b93ba1063e5352b56e23835986bc","ref":"refs/heads/master","pushedAt":"2024-05-21T07:00:57.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Recover longest orf after fragment elimination (#832)\n\n* recover longest orf after fragment elimination\r\n\r\n* delete unused variable","shortMessageHtmlLink":"Recover longest orf after fragment elimination (#832)"}},{"before":"d77a852b9e938df74b650e5182c1c75acce0a149","after":"132ba703f24a372ef130c77869c1568c35c4a93f","ref":"refs/heads/block-aligner","pushedAt":"2024-05-14T10:23:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Disable realign for iterative nucl search (for now?)","shortMessageHtmlLink":"Disable realign for iterative nucl search (for now?)"}},{"before":"217af4e1bd83198fd0a4b2b1745cb4b2743a7e17","after":"d77a852b9e938df74b650e5182c1c75acce0a149","ref":"refs/heads/block-aligner","pushedAt":"2024-05-14T09:27:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Precompute ALP values for nucl 5/2","shortMessageHtmlLink":"Precompute ALP values for nucl 5/2"}},{"before":"0c55cfdece95f6042dfe7bbf434ef3c285d672b7","after":"217af4e1bd83198fd0a4b2b1745cb4b2743a7e17","ref":"refs/heads/block-aligner","pushedAt":"2024-05-12T15:03:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Add support for DNA MSAs, add blockaligner, fix prefilter index issue","shortMessageHtmlLink":"Add support for DNA MSAs, add blockaligner, fix prefilter index issue"}},{"before":null,"after":"0c55cfdece95f6042dfe7bbf434ef3c285d672b7","ref":"refs/heads/block-aligner","pushedAt":"2024-05-11T05:45:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Merge branch 'master' into block-aligner","shortMessageHtmlLink":"Merge branch 'master' into block-aligner"}},{"before":"d4841a8efad066e9758b6626cc64c5ef5ee53055","after":"998c50a01da760713ca2c7580801e94555d23c4d","ref":"refs/heads/master","pushedAt":"2024-05-02T05:29:22.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"fix typos hindering expandable profile db to be merged properly (#840)","shortMessageHtmlLink":"fix typos hindering expandable profile db to be merged properly (#840)"}},{"before":"804bb2af6d1be4086252c46bf15f3c75a5d9e931","after":"d4841a8efad066e9758b6626cc64c5ef5ee53055","ref":"refs/heads/master","pushedAt":"2024-04-03T02:56:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Future-proof ncbi URLs to include the nlm subdomain","shortMessageHtmlLink":"Future-proof ncbi URLs to include the nlm subdomain"}},{"before":"f6c98807d589091c625db68da258d587795acbab","after":"804bb2af6d1be4086252c46bf15f3c75a5d9e931","ref":"refs/heads/master","pushedAt":"2024-04-02T13:26:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix --taxon-list being broken multi-threaded in prefilter and ungappedprefilter","shortMessageHtmlLink":"Fix --taxon-list being broken multi-threaded in prefilter and ungappe…"}},{"before":"abab073141f0bba788aed068b376de99c4c3519a","after":"f6c98807d589091c625db68da258d587795acbab","ref":"refs/heads/master","pushedAt":"2024-03-07T17:44:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Only fetch cSeqId if its needed in expand","shortMessageHtmlLink":"Only fetch cSeqId if its needed in expand"}},{"before":"950342d9c655e2bbb48ef8a4f52eb87c8db5c317","after":"abab073141f0bba788aed068b376de99c4c3519a","ref":"refs/heads/master","pushedAt":"2024-02-16T05:46:39.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix test","shortMessageHtmlLink":"Fix test"}},{"before":"78ae2c5b8dba889079745e8013deeb30c3ac8a1a","after":"950342d9c655e2bbb48ef8a4f52eb87c8db5c317","ref":"refs/heads/master","pushedAt":"2024-02-14T08:19:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Remove realloc in QueryMatch to safe memory","shortMessageHtmlLink":"Remove realloc in QueryMatch to safe memory"}},{"before":"cfbea63affb7071bb4f3967bc60d15e1191b85da","after":"78ae2c5b8dba889079745e8013deeb30c3ac8a1a","ref":"refs/heads/master","pushedAt":"2024-02-05T07:36:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Update result2msa to support clustered dbs","shortMessageHtmlLink":"Update result2msa to support clustered dbs"}},{"before":"2fad714b525f1975b62c2d2b5aff28274ad57466","after":"cfbea63affb7071bb4f3967bc60d15e1191b85da","ref":"refs/heads/master","pushedAt":"2024-02-01T14:07:42.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix fasta filename in easy-cluster & easy-linclust usage (#812)","shortMessageHtmlLink":"Fix fasta filename in easy-cluster & easy-linclust usage (#812)"}},{"before":"1806c0c8f7aa4365f9f72c8ea51e947d1e93ccd9","after":"2fad714b525f1975b62c2d2b5aff28274ad57466","ref":"refs/heads/master","pushedAt":"2023-12-07T05:17:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix padded seq db creation","shortMessageHtmlLink":"Fix padded seq db creation"}},{"before":"f5d848309ad023042906fd9c7ced1708ec55cc71","after":"1806c0c8f7aa4365f9f72c8ea51e947d1e93ccd9","ref":"refs/heads/master","pushedAt":"2023-12-06T06:45:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Add padding module","shortMessageHtmlLink":"Add padding module"}},{"before":"22a77eeb1b6c64f1c5f04e1480b4705bb3fbc897","after":"f5d848309ad023042906fd9c7ced1708ec55cc71","ref":"refs/heads/master","pushedAt":"2023-12-06T04:38:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Make sure help parameter is initialized is to 0","shortMessageHtmlLink":"Make sure help parameter is initialized is to 0"}},{"before":"5c6e32c6e5cfad658ca3d95b694ef32c0f761141","after":"22a77eeb1b6c64f1c5f04e1480b4705bb3fbc897","ref":"refs/heads/master","pushedAt":"2023-11-21T08:01:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix Werror/Wpedantic issue","shortMessageHtmlLink":"Fix Werror/Wpedantic issue"}},{"before":"af2cc52dd5e566a8fdbcbc90d2509de6c5ab1a0e","after":"5c6e32c6e5cfad658ca3d95b694ef32c0f761141","ref":"refs/heads/master","pushedAt":"2023-11-21T07:50:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"breaking: fix parameter singleton in subprojects\n\nWith subprojects who have their own Parameter class it can happen that\nthe MMseqs2 Parameters object is constructed first (in MMseqsBase.cpp)\nand then the subproject singleton is accessed and but is already wrongly initialized \nas the parent.\n\nHere we introduce a function initParameterSingleton that decides who to initialize.\nSubprojects need to provide this function that calls the correct Parameters constructor now.","shortMessageHtmlLink":"breaking: fix parameter singleton in subprojects"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEiaqUYAA","startCursor":null,"endCursor":null}},"title":"Activity · soedinglab/MMseqs2"}