diff --git a/data/guidedNuclAssemble.sh b/data/guidedNuclAssemble.sh index 2fbfc69a..bfc5308e 100644 --- a/data/guidedNuclAssemble.sh +++ b/data/guidedNuclAssemble.sh @@ -103,6 +103,7 @@ while [ $STEP -lt $NUM_IT ]; do # 3. Ungapped alignment protein 2 nucl if notExists "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP.done"; then + # shellcheck disable=SC2086 "$MMSEQS" proteinaln2nucl "$INPUT_NUCL" "$INPUT_NUCL" "$INPUT_AA" "$INPUT_AA" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_$STEP" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP" ${PROTEIN_ALN_2_NUCL_PAR} \ || fail "Ungapped alignment 2 nucl step died" deleteIncremental "$PREV_ALN_NUCL"