From f99e97cb84553b2c25274dac930fabd48f5b9772 Mon Sep 17 00:00:00 2001
From: Annika Jochheim <annika.jochheim@mpinat.mpg.de>
Date: Wed, 12 Jun 2024 22:45:29 +0200
Subject: [PATCH] remove incorrect quotation marks

---
 data/guidedNuclAssemble.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/data/guidedNuclAssemble.sh b/data/guidedNuclAssemble.sh
index d7e2448b..2fbfc69a 100644
--- a/data/guidedNuclAssemble.sh
+++ b/data/guidedNuclAssemble.sh
@@ -103,7 +103,7 @@ while [ $STEP -lt $NUM_IT ]; do
 
     # 3. Ungapped alignment protein 2 nucl
     if notExists "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP.done"; then
-        "$MMSEQS" proteinaln2nucl "$INPUT_NUCL" "$INPUT_NUCL" "$INPUT_AA"  "$INPUT_AA"  "${TMP_PATH_GUIDED_ASSEMBLY}/aln_$STEP" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP"  "${PROTEIN_ALN_2_NUCL_PAR}" \
+        "$MMSEQS" proteinaln2nucl "$INPUT_NUCL" "$INPUT_NUCL" "$INPUT_AA" "$INPUT_AA" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_$STEP" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP" ${PROTEIN_ALN_2_NUCL_PAR} \
             || fail "Ungapped alignment 2 nucl step died"
         deleteIncremental "$PREV_ALN_NUCL"
         touch "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_${STEP}.done"